LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju02g0541	ATGCACAGCTTCACAAAACGCAGACACTTTCAATTTTCAGTTCCACAAGCCACGATGATCGATAATCTTCTTATTTCCAGGGTCAACGAAGATGCTCAGGATCCTCTCTTACCTTTTCTCCGGTCCATTAGGGAAGCTCTCGAAGATCCCATCTCCGGCCGAACTTCCAATTTGGGTCTCGTGACCCTTCTACAAGATTGCATCAGAAAGTTCAAGCACCATCTTCAGTACAGAAATGACATCAGATTTCTTAAGATTTGGCTCCTATATATGGATGCCAGTAAGGATTATAATAACGTGTTCAAAGAAATGCTGGATAGGGATGTCTGTGCCGATCAGTCTTCACTTTATGTATGGTCTGCATATTTTTTCGAATCCAAAGGGAAATTGCATGATGCTCACACGGTCTATAAGCTTGGCATCTCCAGGAACGCAGAACCAATTGAGTGGCTGAAGAAAGCGCATAAATTGTTCCTCAATAGAATTTCTGAAATAGTGACTGCTGCTCCACGTCAGAAGATTGATGATAATGAATCCATGAAATCTGAAGATGGCGCCATTAATCCATGGAGCGCCTCAGTCATGGATGATCTGTTGAAGAGGATACATGCTTTGATCACAAAATTTGAAGGGTATCATTCAAGTAACAAAGCTTACGCCAGAAAAGTTGCCTTGTCTTCTTTGAAGAACTCATCAAGGAATAAAATTGTAGAGATAGGTGGAAAGAAGTATCAAATCAAGGGTTGTGCCGGACAAGGTGGTTTCGCTCAAGTATACAAGGCATATGTTGATAGTAATCCAGATGAAGTTGTCGCACTGAAGATCCAAAAACCAGCATTCCCTTGGGAATTTTACATCTATCGTCTGCTTGATCAACGTATCTTAGAGAGTGAAAGACCAAGCTATGGCTTTGCTCATAGAATTCATATCCATTCTGACTGTAGCATACTCATCTGCGACTACTTAACTCATGGGACATTACAGGATGTCATAAATTCATATTTGGTCCTGGGGAAATCCATGGAAGAAGTGCTATGTATTTACTACACTATAGAAATGCTACATATGCTTGAGACATTGCATGATGTTGGGATAATGCATGGTGATTTCAAGCCAGATAACCTGCTTGTTCGCTATGCTAGGGGTGACCTTAAAGAAGATGAGTTTTTGAACAGAAGTGGTCCTTGGCGTGATCAGGGTCTTTGCCTTGTAGACTGGGGAAGAGGGATTGATCTGCGTCTCTTTCCGGATCACACAGTATTTAATGGAGACTGCAGAACTTCTGGGTTTCGTTGCATCGAGATGCAAGAGAACAGGACATGGAAATTTCAGGTAGACGCATATGGCCTCTGTGTTGTTGTCCACATGATGTTGCATAACTCTTATATGGAGATTGTCAAAAAAGAATCATCCGAAGGGGGCTACGTCTATCTACCCAGACTGCCGTTTAAACGTTACTGGAACGTTGAGCTCTGGAAGACTTTCTTTACCAAGATGTTAAACCAATACCCTGGCAATGATGACAGAAGGTTGATGCAGGAGTTGAGAAAGTCCTTCGAGGACTACATGGGCTCCAATCCGCAGCTTATAAAGAAGCTAAAGGAGTTACTCGTGAAGCAAAGGGCTTCCCTGTGCTCTGCTTAG	1644	0.424	MHSFTKRRHFQFSVPQATMIDNLLISRVNEDAQDPLLPFLRSIREALEDPISGRTSNLGLVTLLQDCIRKFKHHLQYRNDIRFLKIWLLYMDASKDYNNVFKEMLDRDVCADQSSLYVWSAYFFESKGKLHDAHTVYKLGISRNAEPIEWLKKAHKLFLNRISEIVTAAPRQKIDDNESMKSEDGAINPWSASVMDDLLKRIHALITKFEGYHSSNKAYARKVALSSLKNSSRNKIVEIGGKKYQIKGCAGQGGFAQVYKAYVDSNPDEVVALKIQKPAFPWEFYIYRLLDQRILESERPSYGFAHRIHIHSDCSILICDYLTHGTLQDVINSYLVLGKSMEEVLCIYYTIEMLHMLETLHDVGIMHGDFKPDNLLVRYARGDLKEDEFLNRSGPWRDQGLCLVDWGRGIDLRLFPDHTVFNGDCRTSGFRCIEMQENRTWKFQVDAYGLCVVVHMMLHNSYMEIVKKESSEGGYVYLPRLPFKRYWNVELWKTFFTKMLNQYPGNDDRRLMQELRKSFEDYMGSNPQLIKKLKELLVKQRASLCSA	547

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju02g0541	547	Pfam	Mad3/BUB1 homology region 1	29	141	IPR013212	-
	Alju02g0541	547	Gene3D	Transferase(Phosphotransferase) domain 1	241	545	-	-
	Alju02g0541	547	ProSiteProfiles	Protein kinase domain profile.	244	547	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju02g0541	547	FunFam	Mitotic checkpoint serine/threonine-protein kinase BUB1	242	544	-	-
	Alju02g0541	547	SUPERFAMILY	Protein kinase-like (PK-like)	241	527	IPR011009	-
	Alju02g0541	547	SMART	mad3_bub1_i	20	141	IPR013212	-
	Alju02g0541	547	PANTHER	MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1	177	541	IPR015661	GO:0007094
	Alju02g0541	547	SMART	serkin_6	244	523	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju02g0541	547	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	365	377	IPR008271	GO:0004672\|GO:0006468
	Alju02g0541	547	Pfam	Protein kinase domain	246	460	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju02g0541	547	ProSiteProfiles	BUB1 N-terminal domain profile.	24	182	IPR013212	-
	Alju02g0541	547	Gene3D	-	25	180	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju02g0541	Alju-ChrAlju02	3986605	3990981	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju02g0541	242	389	CBL-interacting serine-threonine protein kinases	AT5G45820	28.481	7.28e-06	46.6

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	BUB	Alju02g0541		Pkinase	6.1e-12	CL0016