Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g0539 ATGGTTGCCCCTGAAAAATTGAACTTATGGTTGTTTAAGAGGAAGGGACTAGGGTTTATATTCCAGATTGTGTATGTGTGGTGGGTTGTTCTACTGTTCCTTGGACCTGTGGCGGGTCTGAGACCATTAAGAGAAGGAACTCGGTCATGGAGCGATGAGTGGCTATTTTCAACAAAAGATGAAAGTGATCAATTTTCACAATGGAACATAACAGGAACTTACAAAGGGACATGGAATTTCTTAGGTTATGCAAATGGCTCTTCAAGATTTTCAGACATCGGAAAAACAAATGGCAATTCTGTAATTGAATTATTTAGTACGCCCACAAAAATAACTGGTGTGCATTATGTTCAGGGGGTGGTTATATTCCATGATGTGTTTGACAATGAGTACAATGTTGGTGGTGCTCAAATCCGAGTGGAAGGTGTATATATATGGCCTTTTAAACAGCTTCGAATGGTAGCTAACAGTGGAAAAGAGGGAAATTCTAATCAGGATGAAGATTATCTCTTATCTAATCCATATCATCTGCTTGGATTGTTCTCATCTCAGGTATTCCAAGAATCCTCACGAGATAAGACAAGGAGAAGAACACACTCTCCAATATATGACATGGAGAAACATTGTAATATTGAAATTGCAGCACAGTTTTCACGCGAATCATCAAAAAATGATGGGGATCATGATCGATTCCACCTAGAAGGGTTGATGGAGAGTCCCTCGGTGGATGATGATGGGGATTGCTTCTCACCTTTAATGTTAAATGCAACTTCTGTTAACATTGAGGTCTACTATAACAAAGCAGTGAACTACACCTTGATGGTCACCTTTATCTCTTTCTTGCAAGTTCTTCTATTGATTCGGCAAATGGAACATAGCAACACTCAATCTGGGGCTGCTAAGGTTTCAAAAATAATGATTGGCCAACAGGCCATAATGGATGCTTATCTTTGCCTTTTACATCTGACTGCAGGAATACTAGTTGAATCCTTGTTTAATGCTTTTGCAACTGCTGCTTTTTTCAAATTTGTGGTCTTCTCGATATTTGAGATGAGATATCTCCTTGCGATTTGGAAGGCAAATAGGCCTTTGAGTAATGGGGAAGGTTGGGAGACAGTGAGGCGCGAACTTTCATCTTTATACATTCGTTTCTATGGGATCCTGGTGGGAGGAATTCTGCTCATGTACCAGTTCCATAATTATTTGAGACCTATGCTTCTTCTCATGTACTCATTTTGGATACCTCAGATAATTACCAATGTTATTCGTGATTCCCGCAAACCGTTACATCCTCATTATATCTTAGGGATAACTGTCACTCGCCTGGCAGTGCCATTATATACATTTGGTTGCCCAAAAAACTTCATGCGCATTGAACCAGACAAGAGCTGGTGTTTGTGTCTAACTGCATTTATTGGACTTCAGGCTGCAATTCTTCTGCTTCAGAACTATCTTGGGTCCCGCTGGTTCATTCCTCGTCAGATTCTGCCCGAGAAATACAGCTACTACAGAAGGTTTGGTCAAACTACAGATCATGCGACAGATTGTGTTATTTGCATGACGGCTATTGATCTTTCTCAGCGACCAAATGATTGCATGGTGACACCTTGTGAGCATTTCTTCCACTCTGGTTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGCCCGACATGCCGGCGCCCTCTGCCACCTGCTTAG 1701 0.4109 MVAPEKLNLWLFKRKGLGFIFQIVYVWWVVLLFLGPVAGLRPLREGTRSWSDEWLFSTKDESDQFSQWNITGTYKGTWNFLGYANGSSRFSDIGKTNGNSVIELFSTPTKITGVHYVQGVVIFHDVFDNEYNVGGAQIRVEGVYIWPFKQLRMVANSGKEGNSNQDEDYLLSNPYHLLGLFSSQVFQESSRDKTRRRTHSPIYDMEKHCNIEIAAQFSRESSKNDGDHDRFHLEGLMESPSVDDDGDCFSPLMLNATSVNIEVYYNKAVNYTLMVTFISFLQVLLLIRQMEHSNTQSGAAKVSKIMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKANRPLSNGEGWETVRRELSSLYIRFYGILVGGILLMYQFHNYLRPMLLLMYSFWIPQIITNVIRDSRKPLHPHYILGITVTRLAVPLYTFGCPKNFMRIEPDKSWCLCLTAFIGLQAAILLLQNYLGSRWFIPRQILPEKYSYYRRFGQTTDHATDCVICMTAIDLSQRPNDCMVTPCEHFFHSGCLQRWMDIKMECPTCRRPLPPA 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g0539 566 SUPERFAMILY RING/U-box 515 565 - -
Alju02g0539 566 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 504 566 IPR013083 -
Alju02g0539 566 SMART ringv_2 515 560 IPR011016 GO:0008270
Alju02g0539 566 PANTHER RING ZINC FINGER PROTEIN 123 565 - -
Alju02g0539 566 CDD RING-H2_TUL1-like 510 565 - -
Alju02g0539 566 FunFam E3 ubiquitin-protein ligase, putative 502 566 - -
Alju02g0539 566 Pfam Ring finger domain 515 560 IPR001841 -
Alju02g0539 566 ProSiteProfiles Zinc finger RING-type profile. 516 560 IPR001841 -
Alju02g0539 566 SMART ring_2 516 559 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g0539 Alju-ChrAlju02 3973754 3981749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g0539 516 563 C3H Transcription Factor Family AT4G12190 39.583 6.76e-09 50.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju02g0539 02 3973754 3981749 Alju02g0539 02 3973754 3981749 ECH