Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g0536 ATGGTTTTCTCTTTTTTCCATTTTCTTTTCCCATATTTTCCTTCCACTCAAGCTTTCCTCCCATCCAAGCAGTGCAGAAGGCTCTCAGTTTCAGTTATATGCCGAACAAGCGCGAAATCGAGGAACATTTTTCAATCATCGAACCCGCGTTCAGGGGCAAAGCCGTTCCCAGAAGGGCCCTCCTCTTCCATGTCACTGCACGTTTTCAAAGAGACTCTCAAGCCTTGCACATCGGTTAGCCAAAAGCCGTCTTCGATTCTCCGAGATTCCGACCTCATAATCCCTAGAAAACCCCCAAAGTCCTCTCTCACCCAGCAGCTTCGTCGCCTGCAAGACCCACTTGCTCCTCCCCTTATTCAGCCGCACAATTCACCTAAGCGAGAAAGGGAACAGAAAAGTAGTGACGTCGTGGATGAGGAAGAAGAAGAGGACGAGGACGGGGAGCCAGAATTGAAGAGGGCAAAATTCGGTGGAGATAAATTGTGTCAGTTTCAGTACGATCATACTGGAACCTTTGAGCCCCTGATCTTGTCTTCGGTTGGAGAACTTCCAGTTGTACAGGTTCCTGCATCTATCAACTGTAGACTGCTTGAACATCAAAGAGCAGGAGTGAAGTTTCTGTATAGTTTGTACAAAAACAATCATGGAGGCATTCTTGGGGATGACATGGGTCTTGGGAAGACCATTCAAACGATAGCATTTCTTGCTGCTGTGTTTGGTAAAGATGGAGAATATATGTCAAAGGAAAACCAAGCAATGAAAAAAGATCCTGTATTAATAATATGCCCAACTTCTGTTATCCACAACTGGGAGAATGAATTTTCTAAATGGGCAAACTTCAGCGTTTCCATTTATCATGGTTCTAACCGAGATCTAATATATGATAAATTGGAAGTATATGGAGTGGAGGTGCTTATTACCAGTTTTGACACATACAGAATTCATGGTAGCATCTTGTCAGAAATCAAATGGGACATTGTGGTTATTGATGAGGCTCATCGGCTCAAGAATGAGAAATCGAAACTCTACAGAGCCTGTTTAGAAATAAAAACCCAAAGACGTTTTGGTCTTACTGGCACAATCATGCAAAATAAGATCATGGAATTGTTTAATCTCTTTGACTGGGTTGTTCCAGGATCCCTGGGAACACGGGAACACTTTCGAGATTTCTATGATGAACCCCTGAAGCATGGTCAGAGGTCAACTGCTCCAAAGAGGTTTGTTGAGATTGCCAATAAGCGGAAACAGCACCTTACGACAGTTCTTCAGAAATATATGTTAAGAAGGACGAAGGAAGAGACCATTGGTCATCTTATGATGGGAAAGGAAGATAATGTCGTGTTCTGTGCCATGAGTGAATTACAAAAACGGGCATATAGGAGAATGTTACAACTTCCCGATATCCAATGCCTTATTAATAAGGATTTACCTTGTAGTTGTGGAAGCCCACTCACACAAGTTGAATGTTGCAAGAGGATTGTATCAAATGGAATCATTTGGCCTTACCTTCACAGAGATAACCCTGATGGTTGTGATTCATGCCCCTTTTGCCTTGTCCTCCCTTGCCTTGTCAAGCTTCAACAGATAAGCAATCACCTTGAGCTGATCAAGCCAAACCCCAAAGATGACCCGGACAAACTAAAAAAAGATGCAGAGTTTGCTGCTGCTGTCTTTGGCCCTGATATTGATTTGATGGGTGGGAACATGCAGATTGAGAGTTTTATGGGTCTAAGTGATGTGAAACATTGTGGAAAAATGAGAGCACTTGAAAAACTTTTGTTTTCATGGATCTCTCAGGGTGATAAAATTCTTTTGTTTAGCTATTCCGTAAGAATGCTTGACATACTGGAGAAATTTCTTATAAGAAAAGGCTACTGCTTCTCAAGACTAGATGGATCTACTCCAACAAATTTACGCCAGTCTCTGGTTGATGACTTCAACTCAAGTCCAAGCAAACAAGTATTCTTGATATCAACTCGAGCTGGCGGGCTTGGATTGAACCTTGTCAGTGCGAATCGTGTGGTGGTATTTGATCCCAACTGGAATCCCGCTCAAGACTTGCAGGCACAGGACAGGTCATTCCGATTTGGGCAGAAGCGACATGTTGTGGTATTTCGGCTTCTTGCAGCTGGTTCACTCGAAGAGCTTGTTTATTCTCGTCAGATCTACAAGCAGCAACTATCGAACATCGCTGTCTCTGGAAAATTGGAAAAGCGTTATTTTGAAGGTGTCCAGGACTGCAAGGAATTTCAAGGGGAACTTTTTGGAATTTGCAATTTATTTCGAGATTTGTCTGACAGGCTTTTTACAAGTGAAATAATTCATGTGCATGATAAGGAAGGAAAAGAACCGGGAGATGATATATTAGTATCAGAGTCTGGGAACAGGTTATCAACCAATTATAAGAGGACTTCAACGAGTGAAGCAGATCTGGAAGATCTTGGCATTGTCTATGCTCATCGGAATGAAGACATAGTCAACTTTGGTCCTGGCACTCAAGAGAAGACAGAGAGCAGCATCTATCATAGTGAAAGCCAAACCATGCCCCTTGTCAAGAGAGAAGAACCAGAGCGTGTAGTTAAAAAACCGAGAGTTCCTATCATCAGTGAGAGGAAGAGAGCCCAATATAGGCTGCTCGCTCGGTCAAGAGGCATGGGAGAGCTTGAATTTAGCATGTGGTTATTGTCAGCGACTCCAATGCAAAGAGAGGAAGTGCTTCAAGACTACAGGAGGAGGAAGATACCTTGA 2748 0.4298 MVFSFFHFLFPYFPSTQAFLPSKQCRRLSVSVICRTSAKSRNIFQSSNPRSGAKPFPEGPSSSMSLHVFKETLKPCTSVSQKPSSILRDSDLIIPRKPPKSSLTQQLRRLQDPLAPPLIQPHNSPKREREQKSSDVVDEEEEEDEDGEPELKRAKFGGDKLCQFQYDHTGTFEPLILSSVGELPVVQVPASINCRLLEHQRAGVKFLYSLYKNNHGGILGDDMGLGKTIQTIAFLAAVFGKDGEYMSKENQAMKKDPVLIICPTSVIHNWENEFSKWANFSVSIYHGSNRDLIYDKLEVYGVEVLITSFDTYRIHGSILSEIKWDIVVIDEAHRLKNEKSKLYRACLEIKTQRRFGLTGTIMQNKIMELFNLFDWVVPGSLGTREHFRDFYDEPLKHGQRSTAPKRFVEIANKRKQHLTTVLQKYMLRRTKEETIGHLMMGKEDNVVFCAMSELQKRAYRRMLQLPDIQCLINKDLPCSCGSPLTQVECCKRIVSNGIIWPYLHRDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDPDKLKKDAEFAAAVFGPDIDLMGGNMQIESFMGLSDVKHCGKMRALEKLLFSWISQGDKILLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVVFDPNWNPAQDLQAQDRSFRFGQKRHVVVFRLLAAGSLEELVYSRQIYKQQLSNIAVSGKLEKRYFEGVQDCKEFQGELFGICNLFRDLSDRLFTSEIIHVHDKEGKEPGDDILVSESGNRLSTNYKRTSTSEADLEDLGIVYAHRNEDIVNFGPGTQEKTESSIYHSESQTMPLVKREEPERVVKKPRVPIISERKRAQYRLLARSRGMGELEFSMWLLSATPMQREEVLQDYRRRKIP 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g0536 915 Gene3D - 176 428 IPR038718 -
Alju02g0536 915 PANTHER SNF2/RAD54 FAMILY MEMBER 77 847 - -
Alju02g0536 915 Pfam SNF2-related domain 211 469 IPR000330 GO:0005524|GO:0140658
Alju02g0536 915 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 429 IPR027417 -
Alju02g0536 915 Gene3D - 441 755 IPR027417 -
Alju02g0536 915 MobiDBLite consensus disorder prediction 113 154 - -
Alju02g0536 915 FunFam Switch 2 178 428 - -
Alju02g0536 915 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 588 741 IPR001650 -
Alju02g0536 915 Pfam Helicase conserved C-terminal domain 585 697 IPR001650 -
Alju02g0536 915 SMART ultradead3 192 387 IPR014001 -
Alju02g0536 915 SMART helicmild6 614 697 IPR001650 -
Alju02g0536 915 MobiDBLite consensus disorder prediction 827 848 - -
Alju02g0536 915 MobiDBLite consensus disorder prediction 43 62 - -
Alju02g0536 915 CDD SF2_C_SNF 579 708 - -
Alju02g0536 915 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 323 750 IPR027417 -
Alju02g0536 915 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 208 379 IPR014001 -
Alju02g0536 915 MobiDBLite consensus disorder prediction 829 846 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g0536 Alju-ChrAlju02 3956768 3963576 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g0536 639 740 RAD5 or RAD16-like Gene Family AT3G16600 37.255 3.51e-11 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Alju02g0536 SNF2_N 2.4e-56 CL0023