Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g0516 ATGTTGTCTGGGCGAGAGGCCATCTGGCTGACAGTCTCTGATTGCCACGCCATGCAGACGATGACCCGATTTGATTTTGATGGACATGAAAATCCTGACTTTTGTGTTGAAACAACTTCAAATTTAGTTTGATTTCCAGCATTCAAGCTATTGCACAGTGAAACAAAAAGAATGGCCTTAGATTTGCACTATGAGGATTCTGCATTACAAGATGATGACTCTAGAGATAAATCTTGTTCTGAGAAGTGGAATTCTGCCCCTGAAGCCATTGCAGATTGTGATAGGGATTCTTCTGGTGACTTTCAATGCAATATTTGTCTGGATTCCTTGCATGATCCTGTATTAACTCTTTGTGGTCATCTCTACTGCTGGCCCTGCATTTACAAATGGTTCCATTACAGTAATGCTTCTTCTCGACGCACAGATCTGGAGAGAACATTATGCCCAGTATGCAAATCAGAAATCTCTCAATCCTCTCTCGTTCCTGTATATGGACGCGTCCGAACCCGAACCACAACACCTTCCAAAGACAGTCCTCATAATTTAGGGAGTGCCATACCTCCAAGACCTCGTGGACCTGTGTCGGTTCACAACTTACCAAGATCATACAACAGCATAGCTGCAGCTCATGACTCTCGAAGATCATATGATACCACAATTGCTTCCCAATCAGCTACTCAACAGTTCAATGTATTTAACTCAACACATGGAGTTTTTGGTCAGATGATATACGAGAGGATCTTTGGTAACCATCTGACAAACATGTACGCTTCTAATTCATATGGTCTCGCTGGGAACAACAATCCGAGGGTGAGAAGGCATTTGATGCCAGCTGATAAATCACTCAGCAGAATCTGTTTTTTCCTCTTCTGCTGCACAGTTTTGTGCCTTCTTTTGTTCTGA 903 0.4275 MLSGREAIWLTVSDCHAMQTMTRFDFDGHENPDFCVETTSNLVXFPAFKLLHSETKRMALDLHYEDSALQDDDSRDKSCSEKWNSAPEAIADCDRDSSGDFQCNICLDSLHDPVLTLCGHLYCWPCIYKWFHYSNASSRRTDLERTLCPVCKSEISQSSLVPVYGRVRTRTTTPSKDSPHNLGSAIPPRPRGPVSVHNLPRSYNSIAAAHDSRRSYDTTIASQSATQQFNVFNSTHGVFGQMIYERIFGNHLTNMYASNSYGLAGNNNPRVRRHLMPADKSLSRICFFLFCCTVLCLLLF 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g0516 300 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 172 IPR013083 -
Alju02g0516 300 Pfam RING-type zinc-finger 103 135 IPR027370 -
Alju02g0516 300 ProSitePatterns Zinc finger RING-type signature. 118 127 IPR017907 -
Alju02g0516 300 MobiDBLite consensus disorder prediction 169 194 - -
Alju02g0516 300 SUPERFAMILY RING/U-box 98 164 - -
Alju02g0516 300 ProSiteProfiles Zinc finger RING-type profile. 103 152 IPR001841 -
Alju02g0516 300 SMART ring_2 103 151 IPR001841 -
Alju02g0516 300 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 70 297 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g0516 Alju-ChrAlju02 3781539 3785878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g0516 96 300 C3H Transcription Factor Family AT4G28270 40.000 6.90e-46 152
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju02g0516 02 3781539 3785878 Alju02g0516 02 3781539 3785878 ECH