Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g0438 ATGGATCCTAACTTTGTCTCACCCTATTCTGCCGCCGATGACGCCTCCTCCTCCTCCTCCTTGGACCCAATGTTTTCCGGCGTCACCTTTCAGTCCATTCTCAGCCTCAATCCCTCCGTCTTCTCTGACTATGCCGCCGCCAATGGCCTCCCCAGCCTCTCCTTCCTATCGGATCCTTCCCTGTCTCTGAATCTTCCGGCTGAATCTACCCAGGGCTTTCCCATTGATGAGGACCACATGGCAGACACTAGTGAGACGAAGCTGACGATCATGCCCAAATCTGAGCCAGGTCTCTTCGAATACCTTGCCACCTCTGGGACCACTTCTCATTCCTTCGACTTCTTCTCCAGCATTTGCCCTCCCAGCTTCTGCGATCCATCAATCTTCAACCCTCTCCCTCAGCTCCATTCCGTCGAGTCCTATCCTCATAAGCGTCCCCGCTTCAACTCACTCGTTTCCACTCCCAACACCATACCGGCGCCGCCGCAACACAGCCCTGAGCTTGCCACCGTCGGCAACAGCTTCTTGGCCATCACGCCTCCGCACAACACCAAACCGGCCACTTCTTCACTGGATGCTCCCGCCGCTGAAAAATCCTCTCCGGTGATCCCTCAGAGCAGCCTGGCACGTCAGCGGCGGCAGAAGCTGAGCGACAAGACTCGGTGCTTGCAGAAATTGATGCCGTGGGACAAGAAGATGGACCAAGCGACGCTGCTGGAGGAGGCGTACAAGTATGTGAAATTTCTGCAGGCCCAGTTCAATGCTCTCCAATCCATGCCCTCCCATTCGCCTTTCCTGTCTCACTGTGGTGCTTCGCATTCCCAATCCTCCGTTCAAAACGGCGGCGTCTTTGGGGATTTGGAGAGGTTGAACCGCAACCAGGTGTTGCAGGTGCTGGTGAACTCGCCTGTCGCTCAAACAAGGCTTTACTCCCAAGGCTTCTGTGTGTTCTCTGTGGAACAGTTAACTTTGCTGGGCAACACGACAGGGAAGAGGCTTATCCTGCCGCAGATGATGTCTGATAACGCTTCTTCAAAATCCTTTCCGTGA 1050 0.5505 MDPNFVSPYSAADDASSSSSLDPMFSGVTFQSILSLNPSVFSDYAAANGLPSLSFLSDPSLSLNLPAESTQGFPIDEDHMADTSETKLTIMPKSEPGLFEYLATSGTTSHSFDFFSSICPPSFCDPSIFNPLPQLHSVESYPHKRPRFNSLVSTPNTIPAPPQHSPELATVGNSFLAITPPHNTKPATSSLDAPAAEKSSPVIPQSSLARQRRQKLSDKTRCLQKLMPWDKKMDQATLLEEAYKYVKFLQAQFNALQSMPSHSPFLSHCGASHSQSSVQNGGVFGDLERLNRNQVLQVLVNSPVAQTRLYSQGFCVFSVEQLTLLGNTTGKRLILPQMMSDNASSKSFP 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g0438 349 Gene3D - 204 263 IPR036638 GO:0046983
Alju02g0438 349 SMART finulus 206 255 IPR011598 GO:0046983
Alju02g0438 349 MobiDBLite consensus disorder prediction 178 211 - -
Alju02g0438 349 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 203 260 IPR036638 GO:0046983
Alju02g0438 349 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 200 249 IPR011598 GO:0046983
Alju02g0438 349 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 153 326 IPR045843 GO:0003700|GO:0006355
Alju02g0438 349 MobiDBLite consensus disorder prediction 178 217 - -
Alju02g0438 349 Pfam Helix-loop-helix DNA-binding domain 210 250 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g0438 Alju-ChrAlju02 3240344 3241393 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g0438 212 322 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G22100 45.614 2.06e-25 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju02g0438 HLH 0.00027 No_clan