Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g0330 ATGCCACGAGGAAAGGCAAATTCTTCATCAGTTGATAAGCCATCTGAACCTGAAAAGCCAACTGAGTCTGATGAGAAGGTTGATCTTGATGAAGAAAATGATCCTGAGGAAACAATGGAAGAAGAAAGTGAATATGAAGAAGTAGAAGAAGAAGAGGAAGTTGAAGAGATAGAAGAGGAGGTGGAAGAAGAGGAGGAAGAGGAAGAGGTTGAAGAAGAAGATGACGATGATGATGCTGATCATGCCAATGACACTGAGGCCATGCAAAACATTAGCAGTGATGAGGCAAAGGTGGAAGATGAGGATGAGAAGAAAAAGCATGCAGAACTTCTCTCTCTTCCTCCTCATGGGTCTGAAGTTTACATTGGTGGCATTCCTCATGATGCCTCAGGTGAGGATTTGAAGACTTTTTGTGAGTCTATTGGTGAAGTTACGGAGGTGAGGGTTATGAAAGGAAAAGATTCTGCAGAAAACAAGGGCTTTGGTTTTGTGACCTTCAAAAGTGTGGAATTGGCATCTAAAGCCATTGAAGAGCTACATAACAAACAATTTAAGGGTAAAAAGATAAAATGTTCATCATCCCAAGCAAAGCACCGACTTTTCATTGGCAATGTTCCGAGAAGCTGGGGAGATGAGGATCTGAGGAAGGTTGTAACTGAGATTGGGCCGGGAGTTACAACCGTGGAACTAGTCAAGGACATGAAGCACCCAACACACAATCGTGGTTTTGCTTTTGTCAACTATTATAATCATGCATGTGCTGAATATTCAAGGAAAAAGATGATGGATCCAAAATTCAAGCTAGGTGACAATGCTCCAACAGTGAGCTGGGCTGACCCTAAAAATGCTGATTCCTCTGCTACATCTCAGGTGAGGGCAGTATATGTCAAGAACTTACCTAAGGATGTAACTGGAGATGAACTAAAGACACTTTTTGAGCACCATGGGAAGATTTCAAAGGTGGTTCTGCCACCAGCAAAGTCTGGGCAAGAAAAGAACAGAATTGGCTTTGTACATTTTGTGGAGAAGTCAAGTGCTATGAAAGCACTTAAAAACACTGAAAGATATGAATTAAATGGTCAAGTTTTGGAGTGCTCTCTAGCAAAGCCCCAGGTTGATAAGTCTGGAGGATCAAATGCACAGAAGTCAGGATTGCTTCCTGGCTACCCTCCCCATGTTGGTTATAATTTGATTGGAGGTGCCTATGGTGGCCTAGGCGCTGGATATGGTACTGCAGGCCTTGCACAGGTGGCACATCCCATGATACATGGAAGGGGTCCAGCTCCATCTGGAATGGCCATGATGCCCATGCTTTTGCCTGACGGGCGAATTGGATATGTCCTGCAACAACCAGGAATGCAGCCACAGACCCCACCTTCACATCACAGAGGCGGCAGGAATGGAGGGAGTGGCAGCAGGAACTTTGGCAGTTCAAGCAAGGGAAGGAACAACAATGCTAGTGGCCAAGGGCGCAGATACCGTCCATATTAG 1491 0.4474 MPRGKANSSSVDKPSEPEKPTESDEKVDLDEENDPEETMEEESEYEEVEEEEEVEEIEEEVEEEEEEEEVEEEDDDDDADHANDTEAMQNISSDEAKVEDEDEKKKHAELLSLPPHGSEVYIGGIPHDASGEDLKTFCESIGEVTEVRVMKGKDSAENKGFGFVTFKSVELASKAIEELHNKQFKGKKIKCSSSQAKHRLFIGNVPRSWGDEDLRKVVTEIGPGVTTVELVKDMKHPTHNRGFAFVNYYNHACAEYSRKKMMDPKFKLGDNAPTVSWADPKNADSSATSQVRAVYVKNLPKDVTGDELKTLFEHHGKISKVVLPPAKSGQEKNRIGFVHFVEKSSAMKALKNTERYELNGQVLECSLAKPQVDKSGGSNAQKSGLLPGYPPHVGYNLIGGAYGGLGAGYGTAGLAQVAHPMIHGRGPAPSGMAMMPMLLPDGRIGYVLQQPGMQPQTPPSHHRGGRNGGSGSRNFGSSSKGRNNNASGQGRRYRPY 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g0330 496 Gene3D - 4 198 IPR012677 -
Alju02g0330 496 MobiDBLite consensus disorder prediction 448 496 - -
Alju02g0330 496 MobiDBLite consensus disorder prediction 1 105 - -
Alju02g0330 496 MobiDBLite consensus disorder prediction 470 490 - -
Alju02g0330 496 Coils Coil 38 74 - -
Alju02g0330 496 Gene3D - 280 385 IPR012677 -
Alju02g0330 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 196 IPR000504 GO:0003723
Alju02g0330 496 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 200 261 IPR000504 GO:0003723
Alju02g0330 496 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 190 IPR000504 GO:0003723
Alju02g0330 496 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 294 363 IPR000504 GO:0003723
Alju02g0330 496 SMART rrm2_1 293 366 IPR003954 GO:0003676
Alju02g0330 496 SMART rrm2_1 119 192 IPR003954 GO:0003676
Alju02g0330 496 SUPERFAMILY RNA-binding domain, RBD 199 283 IPR035979 GO:0003676
Alju02g0330 496 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 7 482 - -
Alju02g0330 496 SUPERFAMILY RNA-binding domain, RBD 115 370 IPR035979 GO:0003676
Alju02g0330 496 CDD RRM_SF 120 192 - -
Alju02g0330 496 MobiDBLite consensus disorder prediction 27 82 - -
Alju02g0330 496 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 199 279 - -
Alju02g0330 496 FunFam RNA recognition motif-containing protein 21 198 - -
Alju02g0330 496 Gene3D - 199 279 IPR012677 -
Alju02g0330 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 198 280 IPR000504 GO:0003723
Alju02g0330 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 292 370 IPR000504 GO:0003723
Alju02g0330 496 SMART rrm1_1 199 276 IPR000504 GO:0003723
Alju02g0330 496 SMART rrm1_1 119 192 IPR000504 GO:0003723
Alju02g0330 496 SMART rrm1_1 293 366 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g0330 Alju-ChrAlju02 2537937 2540794 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g0330 118 374 Eukaryotic Initiation Factors Gene Family AT1G71770 25.926 3.57e-16 79.7