Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g0317 ATGTTCTCACTAAGTCCTGATTCAGTATGGCCCTTTTATGAGGAGAGAATTTCAGGAGCAAACCCAAGAACTCTCTCTTCCCCTCTGATCTCTATAGATCTGAAGATGGATTTGAGGGAATATTACAAGAGTGAAGAAGACAAGAGTATGAACTTTGAAGCTCCAACTTTCTTTGAATGGCTCAAACCTATTCCTTCATCTTCTGTGATTCATCATCATCAAGACGCTATTCAGTTTTTGCCAATTGTAACTGAAAAGCCCTCAATTGAACATAGTACTGTTGGAGCAATTAAACAAGAGAAGAAGGACGACGTAGATGAGCAAGTGACTGTGGCTTTGCACATAGGATTACCTAACTCACAAGGTTTCGAGGCTGATGGTGATCAGAACAATAATAAGAAAGATTCTGATTTGAAGGAGGAGGAAGAAGAAGAAGTGGTGAATAAGAGAAGCTTTCAAGGATTCTCTAAGAATTCTAACACAGAGAGAAGGTTCTGGATACCAACTCCAGCACAGATCCTTGTTGGGCCGATGCAGTTTACTTGCTCCATATGCAGCAAGACCTTCAATAGGTATAATAACTTGCAGATGCATATGTGGGGTCATGGATCAGAGTATAGAAAAGGAGCAGAATCACTGAGAGGAACACAACCAGCAGCAATGTTGAGGCTGCCATGTTATTGTTGTGCACAAGGCTGCAAGAACAATATCAACCATCCAAGAGGGAAGCCTCTTAAGGACTTCAGAACCCTCCAAACCCACTTCAAGAGGAAGCATGGTTCTAAGCCTTTTGTCTGCAGAAAATGCGCCAAAACCTTCGCCGTTAAAGGAGATTGGAGGACTCACGAGAAGAACTGTGGCAAGTTCTGGTATTGCACTTGTGGTTCTGATTTCAAGCACAAGAGATCTCTCAAAGATCATATCAGATCCTTTGGAAAAGGTCACTCCCCTCTTTCTCATCAACATCATGATGATGATGGCCGCAAGCAATATGATTCCATCACTAGTACCACTGCCTCTCAAGAATCTTAA 1032 0.4215 MFSLSPDSVWPFYEERISGANPRTLSSPLISIDLKMDLREYYKSEEDKSMNFEAPTFFEWLKPIPSSSVIHHHQDAIQFLPIVTEKPSIEHSTVGAIKQEKKDDVDEQVTVALHIGLPNSQGFEADGDQNNNKKDSDLKEEEEEEVVNKRSFQGFSKNSNTERRFWIPTPAQILVGPMQFTCSICSKTFNRYNNLQMHMWGHGSEYRKGAESLRGTQPAAMLRLPCYCCAQGCKNNINHPRGKPLKDFRTLQTHFKRKHGSKPFVCRKCAKTFAVKGDWRTHEKNCGKFWYCTCGSDFKHKRSLKDHIRSFGKGHSPLSHQHHDDDGRKQYDSITSTTASQES 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g0317 343 MobiDBLite consensus disorder prediction 309 331 - -
Alju02g0317 343 ProSiteProfiles Zinc finger C2H2 type domain profile. 180 207 IPR013087 -
Alju02g0317 343 MobiDBLite consensus disorder prediction 309 343 - -
Alju02g0317 343 SUPERFAMILY beta-beta-alpha zinc fingers 249 284 IPR036236 -
Alju02g0317 343 SUPERFAMILY beta-beta-alpha zinc fingers 172 203 IPR036236 -
Alju02g0317 343 Gene3D Classic Zinc Finger 179 202 - -
Alju02g0317 343 SMART c2h2final6 180 202 IPR013087 -
Alju02g0317 343 SMART c2h2final6 264 284 IPR013087 -
Alju02g0317 343 SMART c2h2final6 227 259 IPR013087 -
Alju02g0317 343 Pfam Zinc finger, C2H2 type 180 199 IPR013087 -
Alju02g0317 343 Gene3D Classic Zinc Finger 262 311 - -
Alju02g0317 343 MobiDBLite consensus disorder prediction 128 150 - -
Alju02g0317 343 PANTHER ZINC FINGER PROTEIN WIP2 70 333 IPR043584 GO:0003700|GO:0010468
Alju02g0317 343 MobiDBLite consensus disorder prediction 119 150 - -
Alju02g0317 343 ProSitePatterns Zinc finger C2H2 type domain signature. 182 202 IPR013087 -
Alju02g0317 343 FunFam Zinc finger protein WIP2 233 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g0317 Alju-ChrAlju02 2441090 2443123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g0317 44 317 C2H2 Transcription Factor Family AT1G08290 57.143 1.71e-115 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju02g0317 zf-C2H2_6 3.6e-05 CL0361