Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g0258 ATGATTTCAAGATCCACAGCTCCTGGTTTCCCAAATCCCTCACAAGGCCAGTACAATTTTATGTATCCTCCTGCTGCTGCTGCTGCTGCTGATAATAATCTGGTTTCAGCCAGTGTCGAATCAGCTCCTGCTTCTCAGTCAACCTCGCTCATGTTCAATCTCTCCGTCCTCAAAGACAAGCTAACACATGTGCAGACACTCTCGGGTATTCTTATCTCCTCGGATCAGAATCACAGCCTACAAGACTCAACAACCTGCGCAACCTTAGCCAGCATGAATTCTATAATCCAGGAGTTCATAGTCACTGCCTCTTCCATGATGCTCACGTGCCAACACATGGTCCTTAATATCTCTCCCCCACCAGGTACTACTCATTGCACTGAATCCAACTTTGGCAATAATTACCCGAGCATGCATAATAATAGCACAAATAACATAGCTCAACACAGAGGGCAAGGTATATTCTCTAGTCCCGATGATCAAACCTTGGAATGGTTCGGTGGTGAAAGCTATGATAATAACAATAATTGCACTAATAATAATCTCAAGGATGATGATCCGAGTGTTGGAATTAGTGAGACCAAGAGGGAAATGTGTCAAGGGGATGAAACCAATGAACCGAAGAATGAAGACATAATAGAATTGGATGCTGCTGATTTGTTGGCCAAGTACACGCATTACTGTCAAATTTGTGGGAAAGGGTTTAAAAGAGATGCTAATTTGAGGATGCATATGAGGGCTCATGGGGATGAGTACAAGACAAGTGCTGCTTTGAGCAATCCGATGAAGAATAGAGGCAAAGAATGTTCGATGAGCACGTTTAGGCCAAAGAAATACTCATGTCCACAAGAAGGATGTAGGTGGAACCAGAAGCATGCAAAGTTTCAACCTTTGAAGTCAATGATATGTGCGAAGAATCACTACAAGAGGAGTCACTGTCCAAAGATGTACGTGTGCAAGAGGTGCAATATGAAGCAGTTCTCGGTGCTGTCTGATCTGAGAACACATGAGAAGCACTGTGGAGATCTCAAGTGGCAGTGTTCGTGTGGTACGACGTTTTCCAGGAAAGACAAGCTCATGGGCCATGTCGCTTTGTTCGTTGGCCATGCTCCAGCTGTCACTGGCTTGTCGTGTTCTGGAAAATTGGTGGAGCATCATCAGCAGGCGTTGCAACTGCAGGAAGATGGCACTTCAAGATGA 1200 0.4475 MISRSTAPGFPNPSQGQYNFMYPPAAAAAADNNLVSASVESAPASQSTSLMFNLSVLKDKLTHVQTLSGILISSDQNHSLQDSTTCATLASMNSIIQEFIVTASSMMLTCQHMVLNISPPPGTTHCTESNFGNNYPSMHNNSTNNIAQHRGQGIFSSPDDQTLEWFGGESYDNNNNCTNNNLKDDDPSVGISETKREMCQGDETNEPKNEDIIELDAADLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKTSAALSNPMKNRGKECSMSTFRPKKYSCPQEGCRWNQKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNMKQFSVLSDLRTHEKHCGDLKWQCSCGTTFSRKDKLMGHVALFVGHAPAVTGLSCSGKLVEHHQQALQLQEDGTSR 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g0258 399 SUPERFAMILY beta-beta-alpha zinc fingers 224 251 IPR036236 -
Alju02g0258 399 Gene3D Classic Zinc Finger 315 365 - -
Alju02g0258 399 ProSiteProfiles Zinc finger C2H2 type domain profile. 226 253 IPR013087 -
Alju02g0258 399 FunFam Zinc finger protein 574 225 250 - -
Alju02g0258 399 ProSitePatterns Zinc finger C2H2 type domain signature. 228 248 IPR013087 -
Alju02g0258 399 SMART c2h2final6 226 248 IPR013087 -
Alju02g0258 399 SMART c2h2final6 279 312 IPR013087 -
Alju02g0258 399 SMART c2h2final6 317 339 IPR013087 -
Alju02g0258 399 Gene3D Classic Zinc Finger 222 250 - -
Alju02g0258 399 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 40 377 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g0258 Alju-ChrAlju02 1963970 1965169 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g0258 47 372 C2H2 Transcription Factor Family AT5G22890 50.000 1.42e-106 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju02g0258 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju02g0258 02 1963970 1965169 Alju02g0258 02 1963970 1965169 ECH