Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g0256 ATGGAAGGCACGGAGGAAGTGGAGTTTGTGGGCCCGTCTAATGAGCATGGCACCGTCACGCACATCGCCAAGGGCAAGCGTACCAAGAGGAGGCACAGGCCCTCCTCGCCTTGTGCGGTCGTCGCCGCCATGACCTCTAGCTCGTCAAGCGTCTCCGGGGAACACCTCAGCGCCGGTGCAGATTACGCCTCCATTTCCTCCACCACAACAACCGCTACTCATAATTCTGATGACAGCACTGAGGAAGAGGAAGACATGGCTCACTGTTTAATTCTCTTGGCTCAGAGTGGCGATTCCCACCAGAATCTTAAGCACCGACGTCAATCTCATCAAGCCGTCAGAACGGAACCAGGGGGCAGCCGGAGATTCGCCGAGATGCCCACCGTCACCGCCGGTGCCGCCAAAGTTGGCTTGTTTGTGTATGAGTGCAAAACGTGTAACCGAAGTTTTCCTTCGTTTCAAGCGTTGGGTGGGCACAGGGCCAGCCACAAAAAGCCTAAGCTGAAGTTAGATGAGAAGAAACTGCCGCTGCCGCCCCAGCCGCAATTTATCAACAGTTATGAGATTGAAGAAGGTCCGATAAGAAGCAACCCTCAGATTTCTTCTCTTCAATTAGCCAATAATAACATGAATGGGATCGTGTCATCCATCAACAAGGCCAAGATTCACGAGTGTTCCATATGCGGGTCAGAATTCACGTCCGGGCAGGCATTGGGGGGCCACATGAGGAGGCATCGGGCATCCACCGCCACGGGTGGTTCTCAGGCAAGCTACGATGAAGTCGCCGACAACAGGACGGTGGCTGCGGTGGAGGTGAAGCCAAAAGTACTGGCTTTGGATCTAAACCTGCCGGCGCCGGAAGAGGATCATAAGAGGGAATCCAAGTTTGAGTTGACGGCAAAAGAAAAACCATTGGTGCTGTCTGCACCGACGGCTTTGGTGGGCTGCCATTATTAG 957 0.5413 MEGTEEVEFVGPSNEHGTVTHIAKGKRTKRRHRPSSPCAVVAAMTSSSSSVSGEHLSAGADYASISSTTTTATHNSDDSTEEEEDMAHCLILLAQSGDSHQNLKHRRQSHQAVRTEPGGSRRFAEMPTVTAGAAKVGLFVYECKTCNRSFPSFQALGGHRASHKKPKLKLDEKKLPLPPQPQFINSYEIEEGPIRSNPQISSLQLANNNMNGIVSSINKAKIHECSICGSEFTSGQALGGHMRRHRASTATGGSQASYDEVADNRTVAAVEVKPKVLALDLNLPAPEEDHKRESKFELTAKEKPLVLSAPTALVGCHY 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g0256 318 ProSitePatterns Zinc finger C2H2 type domain signature. 225 245 IPR013087 -
Alju02g0256 318 ProSiteProfiles Zinc finger C2H2 type domain profile. 223 250 IPR013087 -
Alju02g0256 318 Gene3D Classic Zinc Finger 138 245 - -
Alju02g0256 318 MobiDBLite consensus disorder prediction 40 56 - -
Alju02g0256 318 ProSitePatterns Zinc finger C2H2 type domain signature. 143 163 IPR013087 -
Alju02g0256 318 SMART c2h2final6 141 163 IPR013087 -
Alju02g0256 318 SMART c2h2final6 223 245 IPR013087 -
Alju02g0256 318 PANTHER ZINC FINGER PROTEIN ZAT5 42 304 - -
Alju02g0256 318 Pfam C2H2-type zinc finger 223 247 - -
Alju02g0256 318 Pfam C2H2-type zinc finger 140 166 - -
Alju02g0256 318 ProSiteProfiles Zinc finger C2H2 type domain profile. 141 168 IPR013087 -
Alju02g0256 318 MobiDBLite consensus disorder prediction 1 56 - -
Alju02g0256 318 SUPERFAMILY beta-beta-alpha zinc fingers 140 245 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g0256 Alju-ChrAlju02 1943917 1944873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g0256 20 318 C2H2 Transcription Factor Family AT2G28200 44.062 5.18e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju02g0256 zf-C2H2_6 2.2e-11 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju02g0256 02 1943917 1944873 Alju10g0371 10 2974082 2974834 CCT
Alju02g0256 02 1943917 1944873 Alju02g0256 02 1943917 1944873 ECH
Alju02g0256 02 1943917 1944873 Alju10g0371 10 2974082 2974834 ECH