Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g0253 ATGGATGCTCACCAAGACCCTCTGATGCAAATTGACGACTTCCAGCTTCATGACTTCATCGACGACACCAATTTCGATCAGTTCATCAATTTGCTCCGTGGGGAGAATGAACACTCATTCTGTAACTTTGATTCTGACCTTATCAATGGCTGCTTAGCTGATACCCAGTTTCTTCCATTGCCTGCAAACCTGTTTGGGTCTAATAATGCTGCTGTGAATGCTTATGATCCAAGCTCTACGCTTAGTTCCTTCTCATGTTTTGATGGAGAAGTGAAGGGAGGAAGAGGAGAAGAAGAGAATGATTCTTCCACTGCAACAACAATCACCGCCACTGAAACCACAACGCGTGATAACGCCAAACACAAGTCCAAAACTGATCGGTCCAAGACTCTGATTTCTGAAAGGAGGAGGAGAGGCCGAATGAAGGAGAAGCTTTACGCTTTGCGTTCTTTGGTTCCCAACATAACTAAGATGGATAAGGCCTCCATCGTGGGCGATGCTGTAGCATATGTGCAGGAGCTGCAAGAGAGGGCTAAGAAGCTTAAGGCTGAGATCAAAGGGCTTGAAGCATCTCTGCTAGCGCCAGAAAACGATCATCGATCAGCTAAAATCTCCATGAAGGTTCAAAACAACAAAATCAACTATCCAATCTGCAAGAAGATCATGCAGATGGACATGGTTCAAGTGGAGGAAAGAGGGTTTTATGTGAAAGTGGTGTGTAATAAAGGAGAAGGAGTGGCTACCTCCCTGTACAGGGCTCTCGAGTCCCTAGCAGGCTTCAGTGTTCAGAATTCAAACTTGGCCACAGTTTCTGACAGATTTCTATTAACATTTACATTGAATGTGAAAGGTTGCGAGCCAGAAATAAACCAGCAAAATCTGAAGCTGTGGGTGGCAGGCGCTCTTCTAAATCAAGGCTTCGAATTTATTACAACTTTCCATGCTTGA 948 0.4462 MDAHQDPLMQIDDFQLHDFIDDTNFDQFINLLRGENEHSFCNFDSDLINGCLADTQFLPLPANLFGSNNAAVNAYDPSSTLSSFSCFDGEVKGGRGEEENDSSTATTITATETTTRDNAKHKSKTDRSKTLISERRRRGRMKEKLYALRSLVPNITKMDKASIVGDAVAYVQELQERAKKLKAEIKGLEASLLAPENDHRSAKISMKVQNNKINYPICKKIMQMDMVQVEERGFYVKVVCNKGEGVATSLYRALESLAGFSVQNSNLATVSDRFLLTFTLNVKGCEPEINQQNLKLWVAGALLNQGFEFITTFHA 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g0253 315 Gene3D - 115 191 IPR036638 GO:0046983
Alju02g0253 315 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 16 305 - -
Alju02g0253 315 MobiDBLite consensus disorder prediction 92 136 - -
Alju02g0253 315 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 125 193 IPR036638 GO:0046983
Alju02g0253 315 Pfam Helix-loop-helix DNA-binding domain 132 175 IPR011598 GO:0046983
Alju02g0253 315 Coils Coil 164 191 - -
Alju02g0253 315 MobiDBLite consensus disorder prediction 115 136 - -
Alju02g0253 315 MobiDBLite consensus disorder prediction 100 114 - -
Alju02g0253 315 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 121 191 - -
Alju02g0253 315 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 125 174 IPR011598 GO:0046983
Alju02g0253 315 SMART finulus 131 180 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g0253 Alju-ChrAlju02 1918783 1920260 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g0253 1 307 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 52.681 7.83e-101 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju02g0253 HLH 1.3e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju02g0253 02 1918783 1920260 Alju02g0253 02 1918783 1920260 ECH