Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g0251 ATGTCGTCGCGACCGTCTGCCTTCGATGCTCTCATGTCAAGTGCTCGTGCCGCTGCCAAGAAGAAGCCCCAATCATCGTCGCCCAAGAAACGAAAAACCCAGGATTCCAATTCAACCCAAAACCCTAAACTCCTCAAAAGCACGGAAAGTACTGGTCAGTCTTCGCAACCCTGCAACGATCCCAAATGCACTGACATTAAAGATTCCGAGAAGGTACAAGAGCCGACAAAAGAAGACTTGAGCAATGGTGGGCTGACAGCGTCAGATACTGCATTTGCGGCGAAGAGAACGCGCGTTGTAGGTTCACATGAGAATATTACAGAACTGAAGAAAAAAGTTTCTCTTTTGAAGAAGAAGCCTGCAGATTTTGACCCTAGTTCCATATCTTGTTGGGACAAGGGTGAACCTGTGCCCTTTCTTTTTCTCTGTTTGGCATTTGATATGATTTCGGATGAAAGTGGACGGATTGTGATGACAGATATAGTGTGCAATATGCTGAGGACTGTCATGAACACTACACCCGAGGATCTGGTGGCTGTTGTTTATCTTTCCTCAAATAAGATTGCTCCGGCACATGAAGGGTTGGAATTGGGAATAGGGGATGCTTCAATCATTAAGGCGCTTGCAGAGGCATGTGGAAGAACTGAGGCGCAGATAAAAAATCAGTATAAGGACAAAGGTGATTTGGGCCTTGTTGCCAAAGCAAGCCGCTCATCTCAATCAATGATGCGGAAGCCTGATCCACTAACCATTAAGAAGGTTTTTAACACCTTTCGTCTTATTGCCAAGGAATCTGGTAAAGACAGCCAAGAGAAGAAAAAGAATCACATCAAGGGACTTCTTGTTGCTGCAACTGACTGTGAACCTCAATATCTAATTCGCCTGCTTCAGTCAAAGTTGCGGATAGGGTATGCGGAGCAAACTCTCTTAGCTGCATTGGGCCAGGCTGCAGTATACACGGAAGGACATTCTGTACCGTCTTCTGAAATTCAGTCCCCTTTAGAAGAGGCTGCAAAGATTGTTAAACAAGTGTATTCTGTTCTTCCTCTGTATGACAAAATAATTCCTGCATTGCTCAGTGGTGGTGTATGGAAACTTCCAGAGATGTGTAACTTTACTCCTGGTGTTCCAGTCGGACCCATGTTGTCTAAGGCAACTAAGGGTGTATCAGAAGTTCTTAATAAATTCCAAGGTGTAGAGTTTACATGTGAATACAAATATGATGGAGAGCGTGCTCAGATTCATTACATGGATGATGGATCTGTTGAGATTTACAGTAGAAATGCTGAACGGAACACTGGAAAGTTTCCTGATGTTGCTGCTGCTATTTCAAGGTTAAAGAAATCGTCTGTGTCATCATTTGTTCTCGATTGTGAACTTGTTGCATATGACCGAGTAAAAAAGAAAATTCTTCCTTTTCAGGTTCTCAGTACCCGAGCTCGGAAAAATGTTTCTATGAGTGATATAAAAGTCGATGTATGCATATTTGCCTTTGATATCTTGTATCTTAATGGCGAGCCACTACTTCAGAAAAACCTAAAAATCCGGAGAGAGCATCTCTATGCCTCTTTCGAGGAAGACCCTGGATTTCTTCAGTTTGCAACAGCAATAACATCAACTGATGTTGAGGAAATACAAAAGTTTCTTGATGCAGCAGTAGATGCTAGTTGTGAGGGTTTAATTATCAAAACTTTGTATGAAGATGCTACTTATGAACCTTCCAAGCGGTCACTCAACTGGCTAAAACTGAAGAAAGATTATCTTGAAAATATAGGGGACTCGCTGGATTTGGTACCTATTGCTGCTTTTCATGGTCGTGGGAAACGTACAGGGGTCTATGGAGCTTTTCTCCTTGCTTGCTATGACAGTAATAGTGAAGAATTTCAAAGCATTTGTAAAATAGGCACGGGATTCTCAGAGGCAATGCTTGATGAACGTTCTGCCAGTCTACGTACTAAAGTGATTCCTAAACCAAAGCCTTATTATCGATATGCTGAGACGATCAATCCTGACGAATGGTTTGAAGCCTCTGAGGTGTGGGAGGTGAAAGCAGCAGACTTGACCATTAGTCCTGTTCACCGTGCCGCAGTAGGCATAGTAGATTCGGATAAGGGAATATCGCTTCGGTTCCCTCGTCTAGTTCGAGTTCGGGATGACAAAACTCCTGAACAAGCCTCATCATCTGAGATGGTTGCTGAAATGTATTCTGCTCAAAAGCACAATCACCCAAACAACGAGGATGATGAAGAAGATTGA 2256 0.4309 MSSRPSAFDALMSSARAAAKKKPQSSSPKKRKTQDSNSTQNPKLLKSTESTGQSSQPCNDPKCTDIKDSEKVQEPTKEDLSNGGLTASDTAFAAKRTRVVGSHENITELKKKVSLLKKKPADFDPSSISCWDKGEPVPFLFLCLAFDMISDESGRIVMTDIVCNMLRTVMNTTPEDLVAVVYLSSNKIAPAHEGLELGIGDASIIKALAEACGRTEAQIKNQYKDKGDLGLVAKASRSSQSMMRKPDPLTIKKVFNTFRLIAKESGKDSQEKKKNHIKGLLVAATDCEPQYLIRLLQSKLRIGYAEQTLLAALGQAAVYTEGHSVPSSEIQSPLEEAAKIVKQVYSVLPLYDKIIPALLSGGVWKLPEMCNFTPGVPVGPMLSKATKGVSEVLNKFQGVEFTCEYKYDGERAQIHYMDDGSVEIYSRNAERNTGKFPDVAAAISRLKKSSVSSFVLDCELVAYDRVKKKILPFQVLSTRARKNVSMSDIKVDVCIFAFDILYLNGEPLLQKNLKIRREHLYASFEEDPGFLQFATAITSTDVEEIQKFLDAAVDASCEGLIIKTLYEDATYEPSKRSLNWLKLKKDYLENIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNSEEFQSICKIGTGFSEAMLDERSASLRTKVIPKPKPYYRYAETINPDEWFEASEVWEVKAADLTISPVHRAAVGIVDSDKGISLRFPRLVRVRDDKTPEQASSSEMVAEMYSAQKHNHPNNEDDEED 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g0251 751 CDD OBF_DNA_ligase_I 592 735 - -
Alju02g0251 751 Gene3D - 390 588 - -
Alju02g0251 751 FunFam DNA ligase 589 748 - -
Alju02g0251 751 Pfam DNA ligase N terminus 138 313 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Alju02g0251 751 Pfam ATP dependent DNA ligase domain 380 584 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Alju02g0251 751 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 120 370 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Alju02g0251 751 Gene3D - 589 750 IPR012340 -
Alju02g0251 751 ProSitePatterns ATP-dependent DNA ligase signature 2. 558 584 IPR016059 GO:0003909
Alju02g0251 751 FunFam DNA ligase 409 534 - -
Alju02g0251 751 FunFam DNA ligase 115 382 - -
Alju02g0251 751 Gene3D - 115 382 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Alju02g0251 751 Pfam ATP dependent DNA ligase C terminal region 609 720 IPR012309 GO:0003910|GO:0006281|GO:0006310
Alju02g0251 751 MobiDBLite consensus disorder prediction 718 751 - -
Alju02g0251 751 MobiDBLite consensus disorder prediction 1 85 - -
Alju02g0251 751 ProSiteProfiles ATP-dependent DNA ligase family profile. 486 622 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Alju02g0251 751 MobiDBLite consensus disorder prediction 63 77 - -
Alju02g0251 751 SUPERFAMILY Nucleic acid-binding proteins 592 738 IPR012340 -
Alju02g0251 751 Gene3D DNA ligase/mRNA capping enzyme 409 534 - -
Alju02g0251 751 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 19 747 - -
Alju02g0251 751 MobiDBLite consensus disorder prediction 30 62 - -
Alju02g0251 751 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 372 590 - -
Alju02g0251 751 CDD Adenylation_DNA_ligase_I_Euk 370 587 - -
Alju02g0251 751 NCBIfam ATP-dependent DNA ligase 196 735 IPR000977 GO:0003910|GO:0005524|GO:0071897
Alju02g0251 751 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 404 412 IPR016059 GO:0003909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g0251 Alju-ChrAlju02 1910398 1916841 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g0251 2 751 Core DNA Replication Machinery Family AT1G08130 69.801 0.0 1086