Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Alju02g0251 | ATGTCGTCGCGACCGTCTGCCTTCGATGCTCTCATGTCAAGTGCTCGTGCCGCTGCCAAGAAGAAGCCCCAATCATCGTCGCCCAAGAAACGAAAAACCCAGGATTCCAATTCAACCCAAAACCCTAAACTCCTCAAAAGCACGGAAAGTACTGGTCAGTCTTCGCAACCCTGCAACGATCCCAAATGCACTGACATTAAAGATTCCGAGAAGGTACAAGAGCCGACAAAAGAAGACTTGAGCAATGGTGGGCTGACAGCGTCAGATACTGCATTTGCGGCGAAGAGAACGCGCGTTGTAGGTTCACATGAGAATATTACAGAACTGAAGAAAAAAGTTTCTCTTTTGAAGAAGAAGCCTGCAGATTTTGACCCTAGTTCCATATCTTGTTGGGACAAGGGTGAACCTGTGCCCTTTCTTTTTCTCTGTTTGGCATTTGATATGATTTCGGATGAAAGTGGACGGATTGTGATGACAGATATAGTGTGCAATATGCTGAGGACTGTCATGAACACTACACCCGAGGATCTGGTGGCTGTTGTTTATCTTTCCTCAAATAAGATTGCTCCGGCACATGAAGGGTTGGAATTGGGAATAGGGGATGCTTCAATCATTAAGGCGCTTGCAGAGGCATGTGGAAGAACTGAGGCGCAGATAAAAAATCAGTATAAGGACAAAGGTGATTTGGGCCTTGTTGCCAAAGCAAGCCGCTCATCTCAATCAATGATGCGGAAGCCTGATCCACTAACCATTAAGAAGGTTTTTAACACCTTTCGTCTTATTGCCAAGGAATCTGGTAAAGACAGCCAAGAGAAGAAAAAGAATCACATCAAGGGACTTCTTGTTGCTGCAACTGACTGTGAACCTCAATATCTAATTCGCCTGCTTCAGTCAAAGTTGCGGATAGGGTATGCGGAGCAAACTCTCTTAGCTGCATTGGGCCAGGCTGCAGTATACACGGAAGGACATTCTGTACCGTCTTCTGAAATTCAGTCCCCTTTAGAAGAGGCTGCAAAGATTGTTAAACAAGTGTATTCTGTTCTTCCTCTGTATGACAAAATAATTCCTGCATTGCTCAGTGGTGGTGTATGGAAACTTCCAGAGATGTGTAACTTTACTCCTGGTGTTCCAGTCGGACCCATGTTGTCTAAGGCAACTAAGGGTGTATCAGAAGTTCTTAATAAATTCCAAGGTGTAGAGTTTACATGTGAATACAAATATGATGGAGAGCGTGCTCAGATTCATTACATGGATGATGGATCTGTTGAGATTTACAGTAGAAATGCTGAACGGAACACTGGAAAGTTTCCTGATGTTGCTGCTGCTATTTCAAGGTTAAAGAAATCGTCTGTGTCATCATTTGTTCTCGATTGTGAACTTGTTGCATATGACCGAGTAAAAAAGAAAATTCTTCCTTTTCAGGTTCTCAGTACCCGAGCTCGGAAAAATGTTTCTATGAGTGATATAAAAGTCGATGTATGCATATTTGCCTTTGATATCTTGTATCTTAATGGCGAGCCACTACTTCAGAAAAACCTAAAAATCCGGAGAGAGCATCTCTATGCCTCTTTCGAGGAAGACCCTGGATTTCTTCAGTTTGCAACAGCAATAACATCAACTGATGTTGAGGAAATACAAAAGTTTCTTGATGCAGCAGTAGATGCTAGTTGTGAGGGTTTAATTATCAAAACTTTGTATGAAGATGCTACTTATGAACCTTCCAAGCGGTCACTCAACTGGCTAAAACTGAAGAAAGATTATCTTGAAAATATAGGGGACTCGCTGGATTTGGTACCTATTGCTGCTTTTCATGGTCGTGGGAAACGTACAGGGGTCTATGGAGCTTTTCTCCTTGCTTGCTATGACAGTAATAGTGAAGAATTTCAAAGCATTTGTAAAATAGGCACGGGATTCTCAGAGGCAATGCTTGATGAACGTTCTGCCAGTCTACGTACTAAAGTGATTCCTAAACCAAAGCCTTATTATCGATATGCTGAGACGATCAATCCTGACGAATGGTTTGAAGCCTCTGAGGTGTGGGAGGTGAAAGCAGCAGACTTGACCATTAGTCCTGTTCACCGTGCCGCAGTAGGCATAGTAGATTCGGATAAGGGAATATCGCTTCGGTTCCCTCGTCTAGTTCGAGTTCGGGATGACAAAACTCCTGAACAAGCCTCATCATCTGAGATGGTTGCTGAAATGTATTCTGCTCAAAAGCACAATCACCCAAACAACGAGGATGATGAAGAAGATTGA | 2256 | 0.4309 | MSSRPSAFDALMSSARAAAKKKPQSSSPKKRKTQDSNSTQNPKLLKSTESTGQSSQPCNDPKCTDIKDSEKVQEPTKEDLSNGGLTASDTAFAAKRTRVVGSHENITELKKKVSLLKKKPADFDPSSISCWDKGEPVPFLFLCLAFDMISDESGRIVMTDIVCNMLRTVMNTTPEDLVAVVYLSSNKIAPAHEGLELGIGDASIIKALAEACGRTEAQIKNQYKDKGDLGLVAKASRSSQSMMRKPDPLTIKKVFNTFRLIAKESGKDSQEKKKNHIKGLLVAATDCEPQYLIRLLQSKLRIGYAEQTLLAALGQAAVYTEGHSVPSSEIQSPLEEAAKIVKQVYSVLPLYDKIIPALLSGGVWKLPEMCNFTPGVPVGPMLSKATKGVSEVLNKFQGVEFTCEYKYDGERAQIHYMDDGSVEIYSRNAERNTGKFPDVAAAISRLKKSSVSSFVLDCELVAYDRVKKKILPFQVLSTRARKNVSMSDIKVDVCIFAFDILYLNGEPLLQKNLKIRREHLYASFEEDPGFLQFATAITSTDVEEIQKFLDAAVDASCEGLIIKTLYEDATYEPSKRSLNWLKLKKDYLENIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNSEEFQSICKIGTGFSEAMLDERSASLRTKVIPKPKPYYRYAETINPDEWFEASEVWEVKAADLTISPVHRAAVGIVDSDKGISLRFPRLVRVRDDKTPEQASSSEMVAEMYSAQKHNHPNNEDDEED | 751 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Alju02g0251 | 751 | CDD | OBF_DNA_ligase_I | 592 | 735 | - | - | |
Alju02g0251 | 751 | Gene3D | - | 390 | 588 | - | - | |
Alju02g0251 | 751 | FunFam | DNA ligase | 589 | 748 | - | - | |
Alju02g0251 | 751 | Pfam | DNA ligase N terminus | 138 | 313 | IPR012308 | GO:0003677|GO:0003910|GO:0006281|GO:0006310 | |
Alju02g0251 | 751 | Pfam | ATP dependent DNA ligase domain | 380 | 584 | IPR012310 | GO:0003910|GO:0005524|GO:0006281|GO:0006310 | |
Alju02g0251 | 751 | SUPERFAMILY | ATP-dependent DNA ligase DNA-binding domain | 120 | 370 | IPR036599 | GO:0003677|GO:0003910|GO:0006281|GO:0006310 | |
Alju02g0251 | 751 | Gene3D | - | 589 | 750 | IPR012340 | - | |
Alju02g0251 | 751 | ProSitePatterns | ATP-dependent DNA ligase signature 2. | 558 | 584 | IPR016059 | GO:0003909 | |
Alju02g0251 | 751 | FunFam | DNA ligase | 409 | 534 | - | - | |
Alju02g0251 | 751 | FunFam | DNA ligase | 115 | 382 | - | - | |
Alju02g0251 | 751 | Gene3D | - | 115 | 382 | IPR036599 | GO:0003677|GO:0003910|GO:0006281|GO:0006310 | |
Alju02g0251 | 751 | Pfam | ATP dependent DNA ligase C terminal region | 609 | 720 | IPR012309 | GO:0003910|GO:0006281|GO:0006310 | |
Alju02g0251 | 751 | MobiDBLite | consensus disorder prediction | 718 | 751 | - | - | |
Alju02g0251 | 751 | MobiDBLite | consensus disorder prediction | 1 | 85 | - | - | |
Alju02g0251 | 751 | ProSiteProfiles | ATP-dependent DNA ligase family profile. | 486 | 622 | IPR012310 | GO:0003910|GO:0005524|GO:0006281|GO:0006310 | |
Alju02g0251 | 751 | MobiDBLite | consensus disorder prediction | 63 | 77 | - | - | |
Alju02g0251 | 751 | SUPERFAMILY | Nucleic acid-binding proteins | 592 | 738 | IPR012340 | - | |
Alju02g0251 | 751 | Gene3D | DNA ligase/mRNA capping enzyme | 409 | 534 | - | - | |
Alju02g0251 | 751 | PANTHER | DNA LIGASE 1/3 FAMILY MEMBER | 19 | 747 | - | - | |
Alju02g0251 | 751 | MobiDBLite | consensus disorder prediction | 30 | 62 | - | - | |
Alju02g0251 | 751 | SUPERFAMILY | DNA ligase/mRNA capping enzyme, catalytic domain | 372 | 590 | - | - | |
Alju02g0251 | 751 | CDD | Adenylation_DNA_ligase_I_Euk | 370 | 587 | - | - | |
Alju02g0251 | 751 | NCBIfam | ATP-dependent DNA ligase | 196 | 735 | IPR000977 | GO:0003910|GO:0005524|GO:0071897 | |
Alju02g0251 | 751 | ProSitePatterns | ATP-dependent DNA ligase AMP-binding site. | 404 | 412 | IPR016059 | GO:0003909 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Alju02g0251 | Alju-ChrAlju02 | 1910398 | 1916841 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Alju02g0251 | 2 | 751 | Core DNA Replication Machinery Family | AT1G08130 | 69.801 | 0.0 | 1086 |