Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g0203 ATGAAGGAAGTTGGCAAGAGCTTGGATCCGCAACTCTGGCACGCGTGCGCCGGTAGTATGGTTCAAATGCCTCCGGTGAACTCCAAAGTCTTTTACTTTCCTCAAGGCCACGCTGAGCACGCTCAGGCCAACCTTAATTTTCCACCCTCCTTAAGGATTCCACCGCTTATTCTTTGTCGTGTGGTATCGGTGAAATTCTTGGCCGACCCAGAAACTGATGAAGTTTTTGCCAAGATAAGGTTGGTTCCTTTGAGAAATTCCGAGCTCGATTCCGACGACGATGGGGTTACGGACGGTAATGGATCGGAGAATTCAGAAAAGCCAGCATCTTTTGCCAAGACATTAACCCAATCTGATGCGAACAATGGTGGGGGCTTCTCTGTTCCAAGGTACTGCGCCGAAACGATCTTCCCACGGCTAGATTACTCTGCTGAACCGCCGGTTCAAACCGTGGCTGCCAAGGACGTTCACGGCGAAACTTGGAATTTCAGACACATATACAGGGGAACACCTCGTCGGCACTTGCTAACCACTGGGTGGAGCACTTTCGTGAACCAAAAGAAACTTGTTGCTGGGGATTCTATTGTTTTCTTGAGGGCTGAAAACGGCGACCTCTGTGTCGGAATTCGCCGAGCAAAACGTGGTGGTTTTGGCAGCCGGATGCAAACCCCGTCGGCCGGCTGGCGTGGTGGTGCTGCCGGAGGTGGTGTGGGGCCTTGTGGGGGCTTCTCTTATTTCTTGAGAGAGGAGAACAAATTACAGCCTAATGCTTGTGGGAATTCAAGCCCTGGAAGAGCAAAAGTGAGGCCTGAATCTGTGATGGAAGCTATGACACTGGCTGCTAGTGGTCAGGCATTTGAAGTAGTTTATTATCCTCGAGCCAGTACTCCTGAGTTTTGTATCAAGGCTGCATCAGTGAGGGCTGCTATGAGAACTCAATGGTGCTATGGCATGAGGTTCAAGATGGCCTTTGAGACTGAGGATTCTTCTAGAATTAGCTGGTTCATGGGGACCATTGCTTCTGTTCAGGTCGTCGATCCCGTGCGTTGGCCCAACTCTCCCTGGCGACTTCTTCAGGTTACTTGGGATGAACCAGATTTGCTGCAGAATGTGAAGCGTGTTAGCCCATGGTTGGTAGAATTGGTATCAAACATGCCAGTCATTCATTTCACGCCTTTTTCTACGCCAAGGAAGAAGCTGCGGCTTCCACAACACTCGGACTTCTTCCACCTTGATGGTCAATTTCCAATACCGACATTTTCAGGCAACTCTCTTGGGACTAGCAGCCCCTCATGTTGTCTATTCGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTAGGAATATCTATCTCAGATCTCCACCTTAACAATAAACTACAGTTGGGGTTGCTTCCAACTAACATCCATCAGCTTGATATTCATCCTGGGATGTCCAATGGCAAGACGGCAAACAATGGCGACAACAATGAAAGCTTGTCCTGCTTGCTGACCATGGGAAATTCTTGCAAGAGTTTGGAGAAATCTGATAATGTGAAGAGACACCGGTTTTTTCTTTTTGGTCAACCAATACTCACTGAGCAACAAATCTCTCGAAGCTGTTCTAGCAATAAGTTGTCTCAGAATGTTAGTGAAAAAGATTTGCCAGGTGAAAATAGAGACAAGACAATGTGCAAATTGGGTGATTCGCAATCTGGTCTTTCTCAGCAGTTTCCACCTGGAAAATCTTCTAATGTTGAGTATTCTTGGCAACTAGGCTTGGATAATGGTCATTGCAAGGTTTTCATGGAATCTGAGGACGTGGGACGGACCCTTGACTTATCATGTCTTGGTTCCTATGAAGAGCTATACAGAAGACTGGCCAACATGTTTGGAATTGAAAGATCTAAAATGTTGCGCCATGTACTCTACTATGATGCTTCAGGTGCTGTTAAGCAAACTGGACTAGAACCCTTCAGCGACTTCATGAAAACAGCAAAACGATTGACAATTCTGACCGATTCAGGCAGCAAAGAGTTTTAG 2031 0.4732 MKEVGKSLDPQLWHACAGSMVQMPPVNSKVFYFPQGHAEHAQANLNFPPSLRIPPLILCRVVSVKFLADPETDEVFAKIRLVPLRNSELDSDDDGVTDGNGSENSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVAAKDVHGETWNFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKRGGFGSRMQTPSAGWRGGAAGGGVGPCGGFSYFLREENKLQPNACGNSSPGRAKVRPESVMEAMTLAASGQAFEVVYYPRASTPEFCIKAASVRAAMRTQWCYGMRFKMAFETEDSSRISWFMGTIASVQVVDPVRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIHFTPFSTPRKKLRLPQHSDFFHLDGQFPIPTFSGNSLGTSSPSCCLFDNAPAGIQGARHAQLGISISDLHLNNKLQLGLLPTNIHQLDIHPGMSNGKTANNGDNNESLSCLLTMGNSCKSLEKSDNVKRHRFFLFGQPILTEQQISRSCSSNKLSQNVSEKDLPGENRDKTMCKLGDSQSGLSQQFPPGKSSNVEYSWQLGLDNGHCKVFMESEDVGRTLDLSCLGSYEELYRRLANMFGIERSKMLRHVLYYDASGAVKQTGLEPFSDFMKTAKRLTILTDSGSKEF 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g0203 676 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677
Alju02g0203 676 ProSiteProfiles PB1 domain profile. 592 672 IPR000270 GO:0005515
Alju02g0203 676 Gene3D - 109 213 IPR015300 -
Alju02g0203 676 SMART B3_2 111 213 IPR003340 GO:0003677
Alju02g0203 676 FunFam Auxin response factor 109 213 - -
Alju02g0203 676 FunFam Auxin response factor 314 387 - -
Alju02g0203 676 Pfam B3 DNA binding domain 111 212 IPR003340 GO:0003677
Alju02g0203 676 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 671 IPR044835 GO:0003677|GO:0006355|GO:0009725
Alju02g0203 676 MobiDBLite consensus disorder prediction 88 109 - -
Alju02g0203 676 MobiDBLite consensus disorder prediction 539 559 - -
Alju02g0203 676 CDD B3_DNA 110 211 IPR003340 GO:0003677
Alju02g0203 676 Gene3D - 314 386 - -
Alju02g0203 676 Gene3D - 591 676 - -
Alju02g0203 676 SUPERFAMILY DNA-binding pseudobarrel domain 105 212 IPR015300 -
Alju02g0203 676 Pfam Auxin response factor 276 359 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g0203 Alju-ChrAlju02 1566635 1569450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g0203 6 674 B3 DNA Binding Superfamily AT4G30080 58.910 0.0 751
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Alju02g0203 B3 1e-21 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju02g0203 02 1566635 1569450 Alju10g0307 10 2355247 2358351 CCT
Alju02g0203 02 1566635 1569450 Alju02g0203 02 1566635 1569450 ECH