Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g0186 ATGAGTTCTGAGGAAAAGGCTGTGAACGAAGGACATCACCCTACCTCGAGCCTTAGAACGGTTTCTCTTTCAGTTCCCAAGGTTGTTGATTCAATAGGTATGCCTGAGGAATCAGCACGTGCCCGTCATTGGAAGCGGCAGAATCTTCTTCTAGAAATACCCCCAAGAACATCAGAAGAGCATTGCCAAGATTTTGTTGGAATTAAGATGCCAATGACTCCAAGTCTCACTCCCACTCCCAAGAGAGTCAATTTTCTTATGACTTCACGCTCTGTTGATGCCCCGATTCATACTTGTCCCGGGCCTTCCACGTCAAGAGGCAAACCATCCATTAAAAGTATCCTACCAAAGCTGAACTTCAAGCATAAGACATCATCAGATATTGAGAAAGCTTTTACTGCAGCTCCAGAAAGCTCCTCTTCAGTCCCTCGAGAAAAGCTTTCAATTGCATCATCATTGTCCCTTACTAAGATATTTACACCTAGAATCAAGAGAACGTCATCATTACCAGTAGATGAACTTCATTCCAACTCAGAATCTGTTCATGCTGAAAGTGTTGGTGGATCTCCATATAGAACGAAGGTGCAGACACAGATAGCCCGCTCTCAGTCGGTGCCTCTCACTGATCTAGACAAGGGCATAAGGAGAATGGATTCATTTTTCCGTGTTATTCCTTCCACTCCTCATGTGAAGGGAAAAAAGGAATTGTTGGTCACATCCCCATCCAAGGATACTGAAAACAATGACGATGACGATGACGATGATGAAGGTGAAGATATAGCTGAAGAAGATGCAGTTTGTAGGATTTGTTTGGTTGATCTATGTGAAGGAGGCGAAACCTTCAAGATGGAATGCAGCTGCAAAGGTGAACTCGCTCTGGCACACCAAGAATGTGCCGTTAAATGGTTTAGTATCAAAGGCAACAAGACCTGTGATGTGTGCAAGCAGGAGGTTCAGAACCTACCTGTCACACTCCTAAGGATCCAAAATGTTGCAACTCAGAATGCGGGGGCTAATAGATCTCTGCAGGCAGATGCAGGTGCATACAGGGTTTGGCAGGAAGTTCCAGTGCTTGTTATTGTGAGTATGCTGGCTTATTTCTGTTTTCTTGAGCAGCTATTGGTTGGAAGAATGGGTACTGGTGCAATTGCCATATCTCTTCCATTCTCATGTGTACTGGGTCTGCTCTCCTCCATGACTTCATCAACCATGGTGAATAGCAGGTTCATCTGGTTTTATGCATCCTCCCAATTTGCTCTTGTGGTTCTTTTCGCACATATATTTTACTCATTGGTTCACGTGCAGGCAGTTTTGGCAATCCTTCTGGCAACATTTGCTGGGTTTGGTGTGGTGATGAGTGGGAGCTCTGTTCTGGTTGAAATTGCTCGATGGAGAAGAAGATGGCTGGCTTCACCAGAGCAGCATCAAGCACATTCAAGCCCTCCCAGCGGTGGTAATCAACAAAACTCAGTTTAG 1476 0.4492 MSSEEKAVNEGHHPTSSLRTVSLSVPKVVDSIGMPEESARARHWKRQNLLLEIPPRTSEEHCQDFVGIKMPMTPSLTPTPKRVNFLMTSRSVDAPIHTCPGPSTSRGKPSIKSILPKLNFKHKTSSDIEKAFTAAPESSSSVPREKLSIASSLSLTKIFTPRIKRTSSLPVDELHSNSESVHAESVGGSPYRTKVQTQIARSQSVPLTDLDKGIRRMDSFFRVIPSTPHVKGKKELLVTSPSKDTENNDDDDDDDEGEDIAEEDAVCRICLVDLCEGGETFKMECSCKGELALAHQECAVKWFSIKGNKTCDVCKQEVQNLPVTLLRIQNVATQNAGANRSLQADAGAYRVWQEVPVLVIVSMLAYFCFLEQLLVGRMGTGAIAISLPFSCVLGLLSSMTSSTMVNSRFIWFYASSQFALVVLFAHIFYSLVHVQAVLAILLATFAGFGVVMSGSSVLVEIARWRRRWLASPEQHQAHSSPPSGGNQQNSV 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g0186 491 MobiDBLite consensus disorder prediction 232 258 - -
Alju02g0186 491 CDD RING_CH-C4HC3_MARCH 267 315 - -
Alju02g0186 491 SMART ringv_2 266 315 IPR011016 GO:0008270
Alju02g0186 491 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 322 IPR013083 -
Alju02g0186 491 PANTHER OS02G0165000 PROTEIN 16 479 - -
Alju02g0186 491 Pfam RING-variant domain 267 314 IPR011016 GO:0008270
Alju02g0186 491 MobiDBLite consensus disorder prediction 473 491 - -
Alju02g0186 491 ProSiteProfiles Zinc finger RING-CH-type profile. 259 321 IPR011016 GO:0008270
Alju02g0186 491 SUPERFAMILY RING/U-box 263 318 - -
Alju02g0186 491 MobiDBLite consensus disorder prediction 472 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g0186 Alju-ChrAlju02 1492965 1497598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g0186 253 321 C3H Transcription Factor Family AT2G37950 44.286 9.70e-13 65.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju02g0186 02 1492965 1497598 Alju10g0286 10 2216277 2219776 CCT
Alju02g0186 02 1492965 1497598 Alju02g0186 02 1492965 1497598 ECH