Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g0180 ATGATTTCCGCCAAAATGTCGAAAGCAGGAAACCGAATGAGCAATGGGCGAAGCTCAAAAACAGCGAGTAAAGCAAGTACGCCTGGAAAAGAGGGCTTGACTAAGACGAATAAACGCGGCGATAGCAATGTGAAGGACGATAAAGTTTCAATCTTTCCGTCATCTACTATTACCACCGAGTTCTTAGAAGGAGGGAAAGGGCCTGAAATTGACGACAATGGGGCCACAAATGGGCGAACCAACGGAATGAGACCCAAGAAAGGTAAACGGAAGCAACATGATGACGATTATAAAGTTGAAGAGAAAGAAAACGCAAAAACGAACGAGCTTCCGATGAGTCGAATCAAGAGAATAATGAAGGCAGAAGATCCCGAGCTACGTGTTTCTGAGGAAGCCATCTTTGTCATCAGCAAAGCTACGGTGAAATTCCTTAAACAATTCACGCGTGAATCTCATGCTTGTTCAGTTCAGGATCGCAAGAAATTTCTTGGTTACCAGCGCCTGTCCGATGTTGTTAGTAAGCAGAGGAGATATGACTTTCTTTTAGACTATGTCCCTGAGAAACTAAAAGCTGAGGATGCATTAAGAAAGAGAGCAGCAATTGGGGGAATCTGA 615 0.439 MISAKMSKAGNRMSNGRSSKTASKASTPGKEGLTKTNKRGDSNVKDDKVSIFPSSTITTEFLEGGKGPEIDDNGATNGRTNGMRPKKGKRKQHDDDYKVEEKENAKTNELPMSRIKRIMKAEDPELRVSEEAIFVISKATVKFLKQFTRESHACSVQDRKKFLGYQRLSDVVSKQRRYDFLLDYVPEKLKAEDALRKRAAIGGI 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g0180 204 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 109 169 IPR003958 -
Alju02g0180 204 Gene3D Histone, subunit A 77 187 IPR009072 GO:0046982
Alju02g0180 204 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 92 197 - -
Alju02g0180 204 MobiDBLite consensus disorder prediction 88 104 - -
Alju02g0180 204 MobiDBLite consensus disorder prediction 8 33 - -
Alju02g0180 204 SUPERFAMILY Histone-fold 92 187 IPR009072 GO:0046982
Alju02g0180 204 MobiDBLite consensus disorder prediction 1 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g0180 Alju-ChrAlju02 1461084 1463545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g0180 77 169 CCAAT-HAP5 Transcription Factor Family AT1G07980 35.484 1.60e-14 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Alju02g0180 CBFD_NFYB_HMF 2.4e-12 CL0012