Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g0174 ATGATGCCTGCAGATTCCCTTTCTGTTCCTTCCACCGTTCACGCCTTGATCGACCCAAACTCCAACCCTAACCCTAATTCAAATCCACTCAAGAAAAGGAGAAATCTCCCCGGAACACCAGATCCAGATGCGGAAGTGATAGCACTGTCGCCTAAGTCCCTCATGGCGACGAACCGTTTCATATGCGAAATCTGCAATAAGGGCTTCCAGAGAGACCAGAACTTGCAGCTGCACCGCCGTGGCCACAATCTTCCCTGGAAGCTCCGGCAGAGAACCAACAAAGAAGAAGTGAGGAAGAAGGTGTATGTTTGCCCTGAGAAGACCTGCGTGCACCACGATCCCTCCAGAGCCCTCGGTGACCTCACCGGCATCAAAAAGCACTTCAGCAGAAAGCACGGCGAGAAAAAGTGGAAGTGCGATAAATGCTCCAAGAAGTATGCGGTTCAATCCGACTGGAAAGCCCATAGCAAGATTTGTGGCACTCGAGAGTACAAATGTGACTGTGGTACCATTTTCTCCAGGAAGGACAGCTTCATAACCCACAGAGCTTTCTGTGACGCCCTGGGGGAAGAAAGTGCGAGAACAATAACAAGAGTACCTTCAGCTTTGAATAACCTGATGAGAAGTGACCGTTTGATGATGAGCATGAATCAGCAGACACCCCGAATAATCCCTGAGATATTTCCCGGGTTTCACTCAGAATTTGGAGGTGGTTCCGAAGGAGCATTAGGGAATTTTGGTCAGCTCAATAATAATCATCACCTCAGCATTGGGAGAATCCCCTCTGGCCACAGAAAGAGCAGGCGCCTTGGCCTTTGGGAGGACAATGTCAAGTGGAAGCGGAACCTTGTCCACCTCATGAATGGAAAGCCTGATGTCGGTTTAGGCAGTACCCTTGGAGATGGAAATGAACGAAGAAATGGTGTGGAACTGCAAAAGATCCAACTTTTGCCTGTCACTGAGAGAGTTACGTTCAAGAAGCCTGCTTTTAGTCTCGAAAAGGCTGCGTCGTCGGGGGCGTATATGGTCAATCCACCGGATCCTGACGTCAAGAGTTGA 1059 0.4958 MMPADSLSVPSTVHALIDPNSNPNPNSNPLKKRRNLPGTPDPDAEVIALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTNKEEVRKKVYVCPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRKDSFITHRAFCDALGEESARTITRVPSALNNLMRSDRLMMSMNQQTPRIIPEIFPGFHSEFGGGSEGALGNFGQLNNNHHLSIGRIPSGHRKSRRLGLWEDNVKWKRNLVHLMNGKPDVGLGSTLGDGNERRNGVELQKIQLLPVTERVTFKKPAFSLEKAASSGAYMVNPPDPDVKS 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g0174 352 SMART c2h2final6 102 132 IPR013087 -
Alju02g0174 352 SMART c2h2final6 137 157 IPR013087 -
Alju02g0174 352 SMART c2h2final6 60 82 IPR013087 -
Alju02g0174 352 MobiDBLite consensus disorder prediction 13 33 - -
Alju02g0174 352 Gene3D Classic Zinc Finger 115 193 - -
Alju02g0174 352 Gene3D Classic Zinc Finger 39 113 - -
Alju02g0174 352 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Alju02g0174 352 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Alju02g0174 352 SUPERFAMILY beta-beta-alpha zinc fingers 59 157 IPR036236 -
Alju02g0174 352 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Alju02g0174 352 Pfam Zinc-finger double-stranded RNA-binding 60 82 IPR022755 -
Alju02g0174 352 MobiDBLite consensus disorder prediction 1 43 - -
Alju02g0174 352 FunFam protein indeterminate-domain 12-like 39 108 - -
Alju02g0174 352 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 214 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g0174 Alju-ChrAlju02 1436059 1440121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g0174 31 218 IDZ Gene Family AT3G45260 80.526 4.47e-114 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju02g0174 zf-C2H2_jaz 4.8e-05 CL0361