Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g0169 ATGGAAATTGATCTGAACCATGCAGTGACTGAGGTTGAAAAGAATGCCTTCTGTGATGGGCACTGTCAGCAAGGCGCTTGTGCTTCATGTTTCTACTCTTCCACTTCTCCTTCTTCCAATTCGCCTTCACCTCGTGTGTCTTCTTCTTATCTTGAACTCTGGCATGCTTGTGCTGGCCCCCTCACCTCCCTCCCTAACAAAGGAAATGTAGTAGTCTACTTTCCCCAAGGTCATCTTGAACAGCTTGCCTCTTTCTCTCCTTTCTCCCCTATGGACATGCCCACCTATGACCTTCAACCACAAATCTTCTGCAGGGTCGTCAATGTCCAGCTTCTTGCCAACAAGGAGAATGATGAGGTTTATACGCAGGTTACTTTGCTTCCCCAGGCAGAGTTAGCAGGGGTGAACTTGGAGGGCCAAGAACTTGAGAAATTGGGAGCATATGAGGAGGAAAATGGAGGATTACCTGCAAAATCAACCCCTCACATGTTCTGCAAAACGCTTACTGCTTCTGATACTAGCACTCACGGGGGTTTCTCTGTTCCTCGCAGAGCTGCTGAGGACTGCTTTCCTCCTTTGGATTATAAGCAGCAAAGACCCTCCCAAGAGCTTGTTGCTAAGGACCTGCATGGAGTAGAGTGGAAATTTCGCCATATTTACAGAGGTCAGCCAAGACGGCATCTGCTCACAACTGGCTGGAGTATTTTTGTCAGCCAAAAGAATCTTGTATCTGGCGATGCAGTACTCTTTCTGAGGGGTGAAAGTGGAGAACTGAGGTTGGGAATCAGGAGATCTGTTCGACCTAGAAATGGTCTTCCCGAGTCAGTTATTGGTGATCAGAATTGCTATCCCAATTTCCTATCTTCAGTGGCTAATGCTATAACCACCAAAAGCGTGTTTCATGTTTTCTACAGCCCAAGAGCAAGTCATGCAGAGTTTGTTGTCCCCTACCAGAAATATGTCAAAAGCATCAAGAATCCAATGACCATTGGGACTAGATTTAAGATGAAATTTGAAATGGATGAATCTCCCGAAAGAAGGTGTAATGGTGGTATAGTGACTGGAATGCGTGATTTGGATCCCTATAGATGGCCTAAATCAAAATGGAGGTGCTTGATGGTAAGATGGGATGAGGATATTGCTACTAATCATCAAGATCGAATTTCTCCATGGGAGATTGAGCCTTCTGTTTCTCTCCCACCCTTGAGCATTCAGTCGTCCCCAAGACTAAAGAAATTGCGGCAAGGTCTGCAAGCTACTACATCAAGTCACCTCATGACCGCAGGTGGCGGTGCATTTATGGACTTCGAGGAGTCTGTAATGTCACCCAAGGTCTTGCAAGGTCAAGAAAATACAGGTTTTGCATCATACTATTTTGGGCGTGATGCAGTGACCAACCAGCCAGATTTTGAGATGAGTCCTCTTAGTCATCCAAATCTTGCATCCACTGGATTAAGAAAGGCTTCTGCTGCTGAACTTATGAGGGTTCACCCTTCTAGTTATGCAGGCTTTGCGGAGACTAACGAGTTTCTGAAGGTCTTGCAAGGTCAAGAAATATGTCCACTGCAATCCCTGAAAGGAAAGGCTGATTTTAACCTTGGGGCTTGGGGTAAACCCAATGCCAGTTGCACAACTTTCAACCAACGTCAGGCATCCAAACCCAACTTCAATACTCTAGGATCAGAAGGCCTTCAAACTGCTTATTTTCCTTACGGTGACATTCACCGAGCTGGTCAAAGTAGCCTGTTGTGTTCTAAACCTGCAAATTTCCAGAGAGAGAATGTCCACACTCCTTCCACTCAGGCAGAGCTCTCAACAAAGGAAGTTGGACGGTCAGATCCCTCAAACAAGGATAAGCTGCAGGACACTTTTTCTGCTGCTGCTTCTTTAGAAGCAAGTCTTAGGATTCCAAATGATGAAACTTTTGAGGGGAAGGTAAATGCCTGTAAACTATTTGGGTTCCCCTTATCTGGGGAAGGCAACTCTCAGAATTTACAGAGCTCTGCTAAAAGGAGTTGCACAAAGGTTCACAAGCAAGGTAGCTTGGTTGGAAGAGCCATTGATCTCTCAAGACTGAGCAGCTACAATGATCTGTTGAGTGAACTAGAGCGACTGTTTGGCATGGAAGGCCTTATAAAGGATCCTGATAAAGGATGGAGGGTCCTGTACACCGATAGTGAAAATGACATAATGGTTGTAGGGGATGACCCATGGCATGAGTTCTGCAGCGTGGTGTCTAAGATCCATATATATACCCAAGAAGAAGTGGAGAAGATGACTATTGGGATGATGACTGATGATACCCAGAGCTGTTTGGAACAGGCACCGGGAGTAATGGAGGCTTCCAAGTCATCATCTGTGGGCCAGCCAGATTCTTCTCCGACAGGAGCCTGA 2394 0.4595 MEIDLNHAVTEVEKNAFCDGHCQQGACASCFYSSTSPSSNSPSPRVSSSYLELWHACAGPLTSLPNKGNVVVYFPQGHLEQLASFSPFSPMDMPTYDLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQAELAGVNLEGQELEKLGAYEEENGGLPAKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGESGELRLGIRRSVRPRNGLPESVIGDQNCYPNFLSSVANAITTKSVFHVFYSPRASHAEFVVPYQKYVKSIKNPMTIGTRFKMKFEMDESPERRCNGGIVTGMRDLDPYRWPKSKWRCLMVRWDEDIATNHQDRISPWEIEPSVSLPPLSIQSSPRLKKLRQGLQATTSSHLMTAGGGAFMDFEESVMSPKVLQGQENTGFASYYFGRDAVTNQPDFEMSPLSHPNLASTGLRKASAAELMRVHPSSYAGFAETNEFLKVLQGQEICPLQSLKGKADFNLGAWGKPNASCTTFNQRQASKPNFNTLGSEGLQTAYFPYGDIHRAGQSSLLCSKPANFQRENVHTPSTQAELSTKEVGRSDPSNKDKLQDTFSAAASLEASLRIPNDETFEGKVNACKLFGFPLSGEGNSQNLQSSAKRSCTKVHKQGSLVGRAIDLSRLSSYNDLLSELERLFGMEGLIKDPDKGWRVLYTDSENDIMVVGDDPWHEFCSVVSKIHIYTQEEVEKMTIGMMTDDTQSCLEQAPGVMEASKSSSVGQPDSSPTGA 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g0169 797 Pfam AUX/IAA family 665 755 IPR033389 -
Alju02g0169 797 SUPERFAMILY CAD & PB1 domains 674 750 - -
Alju02g0169 797 FunFam Auxin response factor 666 760 - -
Alju02g0169 797 CDD B3_DNA 162 264 IPR003340 GO:0003677
Alju02g0169 797 Pfam B3 DNA binding domain 164 265 IPR003340 GO:0003677
Alju02g0169 797 Gene3D - 162 266 IPR015300 -
Alju02g0169 797 SUPERFAMILY DNA-binding pseudobarrel domain 156 274 IPR015300 -
Alju02g0169 797 FunFam Auxin response factor 162 266 - -
Alju02g0169 797 ProSiteProfiles PB1 domain profile. 671 755 IPR000270 GO:0005515
Alju02g0169 797 Gene3D - 666 760 - -
Alju02g0169 797 SMART B3_2 164 266 IPR003340 GO:0003677
Alju02g0169 797 MobiDBLite consensus disorder prediction 777 797 - -
Alju02g0169 797 MobiDBLite consensus disorder prediction 779 797 - -
Alju02g0169 797 MobiDBLite consensus disorder prediction 593 619 - -
Alju02g0169 797 ProSitePatterns 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 22 30 IPR006058 GO:0051537
Alju02g0169 797 ProSiteProfiles B3 DNA-binding domain profile. 164 266 IPR003340 GO:0003677
Alju02g0169 797 MobiDBLite consensus disorder prediction 593 609 - -
Alju02g0169 797 Gene3D - 328 400 - -
Alju02g0169 797 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 49 760 IPR044835 GO:0003677|GO:0006355|GO:0009725
Alju02g0169 797 Pfam Auxin response factor 290 372 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Alju02g0169 797 FunFam Auxin response factor 327 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g0169 Alju-ChrAlju02 1398029 1403527 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g0169 47 795 B3 DNA Binding Superfamily AT5G60450 60.847 0.0 860
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Alju02g0169 AUX_IAA 4e-07 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju02g0169 02 1398029 1403527 Alju02g0169 02 1398029 1403527 ECH