Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju02g0167 | ATGGATTTAGTCAATAGTTGCAAGGAAAAGTTGACATATTTTCGTATAAAAGAGCTCAAAGATGTACTCACTCAGTTAGGCCTTTCAAAACAGGGAAAAAAGCAGGATCTTGTTGATCGGATATTAGCCATTATCTCAGATGAACAAGTTTCCAAATTGTGGGCTAAAAAGAATGCTGTTGGAAAAGAACAGGTGGCAAAATTAGTGGATGACACATATAGAAAGATGCAGATATCTGGAGCAACTGAGCTGGCATCAAAGGGTATGTCAGATAGCAGTAATGTGAAAATTAAAGGTGAAGTTGAAGATTCCTTGCAGTCAGTTACAAAGATTCGCTGTCTCTGTGGAAGTTCTTTGGAAACTGAGGCATTGATCAAGTGTGAGGATACAAGATGTCAAGTGTGGCAACACATGAGTTGTGTTTTAATCCCAGAGAAACCTACAGAAGGCATCCCACCTATTCCTGATAAATTCTATTGTGAGATCTGCCGGCTCAGTCGTGCTGATCCTTTTTGGGTTCCAGTGGCACATCCTTTGTTTCCTGTGAAGTTGAACACGGCCAATGTTCCAACTGATGGCACTAACCCTGTGCAGAGTGTGGAGAGATCATTTCAACTTGCAAGAGCAGACAAGGACTTGGTGTCTAAACCAGAATTTGATGTTCAGGCTTGGTGCATGCTTCTGAACGACAAGGTCCCCTTCAGGATGCAGTGGCCTCAATATACAGATCTACAGGTCAATGGTGTACCTGTTCGTGCCATCAACAGACCTGGTTCACAATTACTTGGGGCTAATGGTCGAGATGATGGTCCAATTATCACGCCATATACAAAAGATGGAATAAACAAGATTTCCTTAACAGGGTGTGATGCTCGCCTTTTCTGCTTGGGGGTTCGTATTGTGAAAAGGCGGACCATGCAACAGATCCTAAGCATAATTCCAAAAGAGTCTGATGGTGAGCCTTTTGAAGATGCTCTTGCACGTGTCTGCCGATGTGTCGGTGGTGGGAATGCAGCTGATAATGCTGATAGTGACAGTGATCTAGAAGTTGTTTCGGACACTTTTAGCATCAACCTCCGTTGTCCGATGAGTGGTTCAAGGATGAAGGTTGCTGGAAGATTCAAGCCTTGTGTTCACATGGGCTGTTTTGATCTTGAAGTTTTTGTGGAAATGAATCAGCGGTCGAGGAAGTGGCAATGTCCTATCTGTCTAAAAAATTATACATTGGAGAATATCATTATAGACCCTTACTTCAACCGTATCACATCTAAGATGATAAGTTGCGGTGAAGATGTGACAGAGGTTGAAGTGAAGCCTGATGGTTCTTGGCGTGTCAAGGCTAAGAGTGAAATTGAACGCCGAGATTTGGGTAATCTTGCACAATGGCACTTTCCTGATGGATCACTATGTGTTTCTACTGATGAAGAAGTCAATAGAGTGGATGCATTTAAGCAGATCAAGCAGGAGGGCGTTTCCGACAGTCCTACTGGTTTAAAACTTGGCATAAGGAAGAATCATGATGGAGTTTGGGTTTTGAGCAAACCCAATGACACCAATACATCATCAGGCAATAGATTGAAAGAGAACCTTGGAAATCATGAACAGGTTGTTATTCCAATGAGTAGCAGTGCCACTGAGAGTGGCCATGAGGGTGATGACCCTAGTGTAAATCAGGGTGGTGGTGGACTTGATTTCTCTAACAATGGGACGGAAATGGATTCTTTCTATCTTAATAATGTTGATTCAGCATACGGGTTTGCAGAAAATAACACTGCTGCTCCAACTGGGGATGCTGAAGTTATTGTTCTAAGTGATTCAGAGGAAGAGAATGACAGGTTGGTATCTTCTGCAATTGACTGCAAGAGTAATCGACCTGATGCTGTTGGTGTTGGTTACTCTGTGCAGCCTTCTGGAATTGCTGATTCACATGCAGAAGATCCCACCCTTGGTGGCTTGGGACTTTTTAATACTAATGAAGATGAATTTGAGATGCCTCCTTCCCTTTGGTCATCATTGCCTTCTGGAACTCAGGCAGGTACAGGATTTCAGTTTTTCACTTCTGATGCAGATGTGTCAGATGCATTGGTCCATCTGCAGCATGGTCCTGTTAATTGTTCCACATCACTGAATGGTTACGCATTGGCACCAGATGCTCCTCTGGGATCTAGCACTCTCATGCCAGATGCCTCTGTGGGTCGGTCTGATGCTTCTGATTTAAACTGTGGTTTAGTTGACAATCCACTGGCATTTGCTGGAGATGATCCCTCACTCCAAATATTTCTCCCCACTAGACCTGCTGAATCATCTGGGCAGCATGAATTGAGAGACCAGGCAGATGTGTCTAATGGTGTCTGCAATGAGGATTGGATTTCTCTCAGGCTTGGAGGTGGTGCTAGTGGTAATAACAGCCATGCTACGACTCCAAATGGTCTGAATTCTAGACAGCAAATTCTATCCAGAGAACCTTCCACAGATGCTATGGCTGATACTGCTTCTTTGCTTCTTGGTATGAATGATGCTAGATCTGACAAGGCAATTAGACAAAGGTCGGACAGTCCGTTCTCATTTCCCCGTCAAAAACGTTCAGTAAGGCCCCGCTTGTATCTGTCTATTGATTCGGATTCGGAGTAG | 2631 | 0.4371 | MDLVNSCKEKLTYFRIKELKDVLTQLGLSKQGKKQDLVDRILAIISDEQVSKLWAKKNAVGKEQVAKLVDDTYRKMQISGATELASKGMSDSSNVKIKGEVEDSLQSVTKIRCLCGSSLETEALIKCEDTRCQVWQHMSCVLIPEKPTEGIPPIPDKFYCEICRLSRADPFWVPVAHPLFPVKLNTANVPTDGTNPVQSVERSFQLARADKDLVSKPEFDVQAWCMLLNDKVPFRMQWPQYTDLQVNGVPVRAINRPGSQLLGANGRDDGPIITPYTKDGINKISLTGCDARLFCLGVRIVKRRTMQQILSIIPKESDGEPFEDALARVCRCVGGGNAADNADSDSDLEVVSDTFSINLRCPMSGSRMKVAGRFKPCVHMGCFDLEVFVEMNQRSRKWQCPICLKNYTLENIIIDPYFNRITSKMISCGEDVTEVEVKPDGSWRVKAKSEIERRDLGNLAQWHFPDGSLCVSTDEEVNRVDAFKQIKQEGVSDSPTGLKLGIRKNHDGVWVLSKPNDTNTSSGNRLKENLGNHEQVVIPMSSSATESGHEGDDPSVNQGGGGLDFSNNGTEMDSFYLNNVDSAYGFAENNTAAPTGDAEVIVLSDSEEENDRLVSSAIDCKSNRPDAVGVGYSVQPSGIADSHAEDPTLGGLGLFNTNEDEFEMPPSLWSSLPSGTQAGTGFQFFTSDADVSDALVHLQHGPVNCSTSLNGYALAPDAPLGSSTLMPDASVGRSDASDLNCGLVDNPLAFAGDDPSLQIFLPTRPAESSGQHELRDQADVSNGVCNEDWISLRLGGGASGNNSHATTPNGLNSRQQILSREPSTDAMADTASLLLGMNDARSDKAIRQRSDSPFSFPRQKRSVRPRLYLSIDSDSE | 876 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju02g0167 | 876 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 101 | 169 | IPR013083 | - | |
| Alju02g0167 | 876 | CDD | SP-RING_Siz-like | 358 | 407 | IPR031141 | - | |
| Alju02g0167 | 876 | ProSiteProfiles | SAP motif profile. | 11 | 45 | IPR003034 | - | |
| Alju02g0167 | 876 | Gene3D | SAP domain | 1 | 62 | IPR036361 | - | |
| Alju02g0167 | 876 | Pfam | SAP domain | 14 | 42 | IPR003034 | - | |
| Alju02g0167 | 876 | SUPERFAMILY | FYVE/PHD zinc finger | 108 | 167 | IPR011011 | - | |
| Alju02g0167 | 876 | PANTHER | ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN | 9 | 636 | - | - | |
| Alju02g0167 | 876 | SMART | sap_9 | 11 | 45 | IPR003034 | - | |
| Alju02g0167 | 876 | FunFam | E3 SUMO-protein ligase SIZ1 | 1 | 66 | - | - | |
| Alju02g0167 | 876 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 335 | 445 | IPR013083 | - | |
| Alju02g0167 | 876 | Pfam | MIZ/SP-RING zinc finger | 357 | 405 | IPR004181 | GO:0008270 | |
| Alju02g0167 | 876 | ProSiteProfiles | Zinc finger SP-RING-type profile. | 344 | 427 | IPR004181 | GO:0008270 | |
| Alju02g0167 | 876 | SMART | PHD_3 | 112 | 164 | IPR001965 | - | |
| Alju02g0167 | 876 | SUPERFAMILY | SAP domain | 1 | 64 | IPR036361 | - | |
| Alju02g0167 | 876 | MobiDBLite | consensus disorder prediction | 511 | 567 | - | - | |
| Alju02g0167 | 876 | CDD | PHD_Bye1p_SIZ1_like | 112 | 163 | - | - | |
| Alju02g0167 | 876 | FunFam | E3 SUMO-protein ligase SIZ2 | 331 | 445 | - | - | |
| Alju02g0167 | 876 | ProSitePatterns | Zinc finger PHD-type signature. | 113 | 163 | IPR019786 | - | |
| Alju02g0167 | 876 | MobiDBLite | consensus disorder prediction | 512 | 552 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Alju02g0167 | Alju-ChrAlju02 | 1383187 | 1391310 | Dispersed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | PHD | Alju02g0167 | zf-MIZ | 3.1e-19 | CL0229 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Alju02g0167 | 02 | 1383187 | 1391310 | Alju02g0167 | 02 | 1383187 | 1391310 | ECH |