Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g0164 ATGGCGAATTCAACCCACGACGAAGACGAGCTCCAAAACCTACTTTCTGAGCAAACCCAAGAATTCATGATGTCTAAAACCCTAGCCTCCGATATCGATTTGGCCTTCGAACTGCAAATGCAAGAAGCGGTTAATGCATCTCTCGGTTCCCAAACCCCTGTTTCACCCCCTCATGCTGTCATCTCCTCCGATGAAGAAAAAGATGGCGGCTTTCTGGGCTTGGCGGCCACGCTTATGCTGGACGACATTCACAGGGTCCCGCAAGAGTTTAAGGACCTCGAACTATGCCAAGCAGAGATGACGAAGATGAGGGAAGATCTGGACCGTTGGGTTTTCGATCACACTTTCGCGAGAGACATTCTGAACATTCCCGAGTACCAATGGGAAAAGTATGGCGACAATTACCACAGGCCCTACCACGTTGACGGACCATCGTCATCTTCGTCGTCGACGTGGAGCCCTTCCCTCGCTGCAGAGTGTTTCAAAGTTTACTGCAAGGGCTTGGTGAGCGAAGAATGGGTTAAAGATATGCGGGTAAAGGTAGCTGGACTCGGGGTTGCAATTCGTGATTCCAGGGACTTCCTAATATTTGAAGTAAAGAAGCCTCTTGAAGTATTTGAAAATGGCGGTGTCTTGCTGAGCAATGAATGTGCTGAGCTGCGTGCCATGGCTGAAGGCCTTGATACCGCTTTTAACTTGGGATTACAAAGGGTTACCTTTTCCTTTGACGACCATATACTTTACCAATACGTCACTGGCAGAGTGCTACCAAGCCAGCATGATAAGTTTGCTGGTTTACTCGATCAGGTATCTCATCTTCAAAGGAAATTTGCATATTGTGAACCATCACTTGTTGAACGAAACCGTATTAGATATGCCTTTAAATCTGCAAGAGAAGCAATAGTTTCTCAAATCAAGTGGTCTGAAGAAAGTGATAAAGGCAAAAGCTTTAAGGAAACCTGTGCAATTTGTTTTGAAGATACTGATATTGAAAAGATGTTTTCGGTGGACCACTGCTTGCATAGATATTGTTGTTCATGTATGAAACAGCATGTGGAGGTGAAGCTGCTTAACGGGATGATGGCAGAGTGCCCTCATGAAGGTTGTAAATCTGAGGTGACTATTGATAGCGGCAAAAAAATTTTAGCGCCAGAATTAGTTGAAGTTGTCAACGAAAGGATTAAGGAATCAGCTATCCCTGTCACAGAGAAATTGTATTGCCCATTTCCTAGATGTTCAGCATTAATGTCAAAGCACGAGGTCTTAGAATACACTAAGACCACATATGTTGGAGCTGAAGAATGTGGAGCGAGGAAATGCATGAAATGTCATCGGTTTTTCTGTATCAATTGCAAGGTTCCGTGGCATAACAACATGACCTGCTCCGGCTATAAAAATTCCTATCATTTTCGTAAGGCAGAAGATTCTAAGCTGAAGTCTCTTGCCTCCAAGAAACTGTGGCGGCAGTGTGTAAAGTGCAATCACATAATTGAACTAGCTGAAGGTTGCTATCATATTACTTGCAGATGTGGGTATGAATTTTGCTACACATGTGGAGCAAAGTGGGAGAACAAGAAAGCAACATGCTCTTGCCCGATCTGGGATGAGCGTAACATTATACGTGATCAACGTGGAAGAAGATGA 1644 0.4434 MANSTHDEDELQNLLSEQTQEFMMSKTLASDIDLAFELQMQEAVNASLGSQTPVSPPHAVISSDEEKDGGFLGLAATLMLDDIHRVPQEFKDLELCQAEMTKMREDLDRWVFDHTFARDILNIPEYQWEKYGDNYHRPYHVDGPSSSSSSTWSPSLAAECFKVYCKGLVSEEWVKDMRVKVAGLGVAIRDSRDFLIFEVKKPLEVFENGGVLLSNECAELRAMAEGLDTAFNLGLQRVTFSFDDHILYQYVTGRVLPSQHDKFAGLLDQVSHLQRKFAYCEPSLVERNRIRYAFKSAREAIVSQIKWSEESDKGKSFKETCAICFEDTDIEKMFSVDHCLHRYCCSCMKQHVEVKLLNGMMAECPHEGCKSEVTIDSGKKILAPELVEVVNERIKESAIPVTEKLYCPFPRCSALMSKHEVLEYTKTTYVGAEECGARKCMKCHRFFCINCKVPWHNNMTCSGYKNSYHFRKAEDSKLKSLASKKLWRQCVKCNHIIELAEGCYHITCRCGYEFCYTCGAKWENKKATCSCPIWDERNIIRDQRGRR 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g0164 547 Gene3D - 459 547 - -
Alju02g0164 547 ProSiteProfiles Zinc finger RING-type profile. 321 365 IPR001841 -
Alju02g0164 547 CDD BRcat_RBR_unk 401 464 - -
Alju02g0164 547 SMART ibrneu5 471 531 IPR002867 GO:0008270
Alju02g0164 547 SMART ibrneu5 388 461 IPR002867 GO:0008270
Alju02g0164 547 FunFam RBR-type E3 ubiquitin transferase 316 401 - -
Alju02g0164 547 FunFam RBR-type E3 ubiquitin transferase 161 304 - -
Alju02g0164 547 FunFam RBR-type E3 ubiquitin transferase 459 547 - -
Alju02g0164 547 ProSitePatterns Zinc finger RING-type signature. 339 348 IPR017907 -
Alju02g0164 547 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 285 532 IPR031127 GO:0004842|GO:0016567
Alju02g0164 547 ProSiteProfiles TRIAD supradomain profile. 317 535 IPR044066 -
Alju02g0164 547 CDD Rcat_RBR_unk 487 522 - -
Alju02g0164 547 Gene3D - 161 307 IPR036397 GO:0003676
Alju02g0164 547 Pfam IBR domain, a half RING-finger domain 474 529 IPR002867 GO:0008270
Alju02g0164 547 Pfam IBR domain, a half RING-finger domain 403 461 IPR002867 GO:0008270
Alju02g0164 547 SUPERFAMILY RING/U-box 319 400 - -
Alju02g0164 547 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 314 398 IPR013083 -
Alju02g0164 547 Pfam Reverse transcriptase-like 180 300 IPR002156 GO:0003676|GO:0004523
Alju02g0164 547 SUPERFAMILY RING/U-box 473 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g0164 Alju-ChrAlju02 1370695 1373030 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g0164 154 520 C3H Transcription Factor Family AT2G19610 36.216 3.51e-74 240