Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g0056 ATGATGAGCGACCCCTACTTCTCCAATGCCTTCCACTTTCCCTCTCCTACTAATCATATTTCGTCTTCTCTCACTTTACCCTCTCCTCCTCCAAGAGAAGCCCTACCTCTCCTTAGCCTAAGCCCTCCAACTCCAAGAGAGTACAAGGAAGCTGAAGGAGACATGGGATGTAGTTCTTTGAACTTGCAACTACACCTTGGCCTTCCCCCCTCCTCAGACAAAGATCAAGTCCCGACCACTGTCCCTTGTGGGTATCTCTCTCATAGCATCACTCCGGGCGCTCAGTACTGGATCCCTACCCCTTCCCAGATTCTGATTGGCCCCACACACTTCTCCTGTCCTCTTTGTTTCAAGACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCAGAATATAGAAGAGGAGCAGAGTCTCTAAGGGGAACACAGCCAACGGCAATGCTGAGGCTTCCGTGCTATTGTTGTGCACAAGGGTGCAAGAACAACATCGAGCATCCGAGGGCCAAGCCTCTCAAGGACTTCAGAACCCTTCAAACCCATTACAAGAGAAAGCACGGCATCAAGCCCTTCATGTGCAGAAAATGCTGCAAAGCCTTTGCTGTGAGAGGTGATTGGAGAACTCACGAGAAGAACTGTGGCAAGCTCTGGTATTGCTCCTGTGGCTCTGACTTCAAGCATAAAAGATCTCTTAAAGACCATATCAAGGCCTTCGGACATGCCCACACGCCTTGTGGTGTTGATAATTGTCTCCATCATCACGAAGTAGCCTCTGAAATTGACCACCCAAATGATTCCTTCCTTTCTCATCATAGCTAG 831 0.4898 MMSDPYFSNAFHFPSPTNHISSSLTLPSPPPREALPLLSLSPPTPREYKEAEGDMGCSSLNLQLHLGLPPSSDKDQVPTTVPCGYLSHSITPGAQYWIPTPSQILIGPTHFSCPLCFKTFNRYNNMQMHMWGHGSEYRRGAESLRGTQPTAMLRLPCYCCAQGCKNNIEHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGHAHTPCGVDNCLHHHEVASEIDHPNDSFLSHHS 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g0056 276 PANTHER ZINC FINGER PROTEIN WIP2 16 263 IPR043584 GO:0003700|GO:0010468
Alju02g0056 276 ProSitePatterns Zinc finger C2H2 type domain signature. 113 133 IPR013087 -
Alju02g0056 276 SUPERFAMILY beta-beta-alpha zinc fingers 177 215 IPR036236 -
Alju02g0056 276 SMART c2h2final6 221 244 IPR013087 -
Alju02g0056 276 SMART c2h2final6 111 133 IPR013087 -
Alju02g0056 276 SMART c2h2final6 195 215 IPR013087 -
Alju02g0056 276 SMART c2h2final6 158 190 IPR013087 -
Alju02g0056 276 SUPERFAMILY beta-beta-alpha zinc fingers 102 134 IPR036236 -
Alju02g0056 276 FunFam Zinc finger protein WIP2 164 246 - -
Alju02g0056 276 MobiDBLite consensus disorder prediction 31 53 - -
Alju02g0056 276 ProSiteProfiles Zinc finger C2H2 type domain profile. 111 138 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g0056 Alju-ChrAlju02 619075 620788 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g0056 6 265 C2H2 Transcription Factor Family AT1G51220 59.272 5.82e-116 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju02g0056 None None None