Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g0049 ATGGATGTGCCGATCACAAAATGGATTGCTCTGCCTCTCTGCCTTGCTTTTCTTCCTTCCTCTTTTGGAGCCCGTGCTCTGCCGCTACTGTTCTGTTTGCTTCCGCCGTGTTCCCGTTTTATCATCATATCACATCATTTTCAGCTGTTGCTTTTACTTTCGCCTTCACTTCACTCGCCCTTCTCCTCGGGATTAAGAATGGAGTCAGATCTCCAGCCGCACGCTCCCATGTTTCGCGATCAGCAGCAGATGAATTCGGGCCTCACACGTTACCGGTCGGCGCCCACTTCCTATTTCACCAATATAATCGACAAGGAGTGCTATGAGCACATATTCAATCGACCGTCTAGCCCCGAAACCGAGCGAGTTTTTTCGCGCCTAATCAGTAGTTTTGCTGAGGACCCCCCATCTCAAAGTCTCGCTCCCCTTACTGTGAAGCAAGAGGACGATCAGAACCATCAGTCTCAGCCTATGCCATCCCTCAAAAATGAACCGGCGCTTCCGCGGCCGCAGCATAACAACATGAGTATTTACGACAGTGCTCCTCGTAATGTGTACACGAGCACAGCGCGACCCCCTCTGCCGAATCAGAGCCATCCCTCAGCTAATCGGTTGCCCCCTATGAAGGCTGGACTTGGAAATACTACTTGCAATCTTACCAGGCATAATAGCTCCCCTCCAGGACTCTTTGCTAACTTCAACATTGATCCTGGCTATGCTGCGGCGGTGAGAGGCATGGGAAATTTTGCTGCAGATAACGCCGCCGAAGCCACAGGCTTTCCTTCCTCAGGGACGTTGAAGAACCGACCGGCTTACTCGTCGGGGTTAATGTCATCCATAGCCGAGACCGGAGTTAAAAACAACATAGAATTAGATAATCCCCCGAAGGAGGCCTTTAGTGAAAGCGAGGACAATGATTTTATCTCAGGTTTCCCTATAGATCCTTGGGACGACCCTGCAATTATGTCTGACAATATTAGTGGTCAAAAAAGATACAGAGATGAAAAGAATGATGCAAAACCATTTTCTGGTTTAAGTGCGGCTGAAGCCGAGAATGAGAGGGGAGGCCAGGCCAGTGGCCCTTCTCCATTGACTCATCACTTGAGTTTGCCGAAAACTGCAATGGAGATGGCAGCCATTGAGAAGTTATTGCAGTACTCAGATTCTGTTCCCTGCAAAATTCGTGCCAAGCGAGGCTGTGCCACTCACCCCCGAAGCATTGCAGAGCGGGTTAGAAGAACTAAAATTAGTGAGCGCATGAGGAAACTACAAGATCTGGTTCCCAACATGGACAAGCAAACAAACACGGCAGACATGTTGGATTTGGCTGTCGACTACATTAAAGATCTTCAAAAGCAGATTCATACACTTTCAGACAGCCGATCTAGATGTACGTGTTTGCAGGTGCAGCGTCGATAA 1419 0.4905 MDVPITKWIALPLCLAFLPSSFGARALPLLFCLLPPCSRFIIISHHFQLLLLLSPSLHSPFSSGLRMESDLQPHAPMFRDQQQMNSGLTRYRSAPTSYFTNIIDKECYEHIFNRPSSPETERVFSRLISSFAEDPPSQSLAPLTVKQEDDQNHQSQPMPSLKNEPALPRPQHNNMSIYDSAPRNVYTSTARPPLPNQSHPSANRLPPMKAGLGNTTCNLTRHNSSPPGLFANFNIDPGYAAAVRGMGNFAADNAAEATGFPSSGTLKNRPAYSSGLMSSIAETGVKNNIELDNPPKEAFSESEDNDFISGFPIDPWDDPAIMSDNISGQKRYRDEKNDAKPFSGLSAAEAENERGGQASGPSPLTHHLSLPKTAMEMAAIEKLLQYSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQKQIHTLSDSRSRCTCLQVQRR 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g0049 472 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 403 466 IPR036638 GO:0046983
Alju02g0049 472 Gene3D - 401 470 IPR036638 GO:0046983
Alju02g0049 472 SMART finulus 406 456 IPR011598 GO:0046983
Alju02g0049 472 MobiDBLite consensus disorder prediction 146 203 - -
Alju02g0049 472 MobiDBLite consensus disorder prediction 146 220 - -
Alju02g0049 472 MobiDBLite consensus disorder prediction 318 368 - -
Alju02g0049 472 Pfam Helix-loop-helix DNA-binding domain 405 451 IPR011598 GO:0046983
Alju02g0049 472 FunFam Transcription factor bHLH130 family 401 470 - -
Alju02g0049 472 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 400 450 IPR011598 GO:0046983
Alju02g0049 472 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 136 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g0049 Alju-ChrAlju02 553682 556689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g0049 67 466 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 38.771 7.27e-74 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju02g0049 HLH 6.5e-10 No_clan