Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju02g0020 ATGCCTCTTCCGGCTAGATCAATCAAGGCTGCCCAGGAAGGCGGTGGCTCCGTCAAGGATTTCGAAGATTCTGAGACCCCTTCCAACAATCTATGGATTGGCAATTTATCGCACGACGTCACCGAGTCCGATCTTATGGCTCTCTTCGCCCAATACGGCGCACTTGATAGCGTCACGTCGTATTCCTCTCGGAGTTACAGCTTCGTGTTTTTCAAGCGCGTCGAGGATGCCAAGGCTGCCAAGAACGCGTTACAAGGCACCCTTCTGCGCGGGATTCCCATGAAGATTGAGTTTGCGAGACCGGCAAAGCCATGTAAACAACTTTGGGTGGGTGGTATTAGCCCAACTGTTACAAAGGAAGGACTGGAGGCTGAGTTTCGCAAGTTTGGTAAGATTGAGGATTTTAAGTTTGTCAGAGACCGCAACACTGCATTTGTTGAATATTTCAATTTAGATGATGCAACTCATGCCATGAAAATGATGAATGGAAAGCATATTGGTGGCGACCAAATTCGTGTAGATTTCCTTCGATCGCAATTGTCGAAAAAGGATATGTTGCTTGAGTATGGGCAGTTTCAGGGAAAAATCACAGGCCCTCCTGATTTCTACTCTGGTCAGAAAAGACCACTGCAAACACAGCCTTCAGTTGGGAGGAAGGGAGATGGTCAACCCAGCAATATTTTGTGGATAGGTTATCCTCCTTCTCTTCAGATTGATGAGCAAATGCTCCACAATGCCATGATTTTATTTGGTGAAATTGAGAGAATCAAGAGCTTTCCTTCAAGGCACTACTCATTTGTGGAATTCAGGAGTGTGGATGAAGCCCGGCGTGCCAAAGAGGGTCTTCAAGGTCGGCTTTTCAATGACCCTCGGATTACTATTATGTATTCAAGCAGTGAGTTGGCACCTGGCAAAGATTACCCTGGCATTTTCCCTGGAAGCAAAGGAACAAAACCTGACATGTTCTTAACTGAGCAAACATTTCGACCATTACAGATGGATGTGTTTGGCCATAATCGTCCAATGGTTCCAAATAATTTTCCCAGCCAGTTAGCACCTGGTGTTATTGTTGGACCAAATGTACCATTGAGACCTTTTGGTCCTCAAGGTAGTCTTGAACCTTTGCTTTCCGGTAGTGAGTTTAATGAATTGGGCACAAGCCAAAAGTTTCAGGATGGTAGCTCCAAAAGTCCAATGGGTCCAAATTGGAAACGCCCATCTCCTCCAGCAGCAGGCATGCTCCATTCTACACCGGGTGTTAGACCTCCAACTAGATCCACATCTAGCGCATGGGATGTGCTTGACATAAACCAGTTTCAGAGGGATTCAAAGCGTTCAAGGATAGATGGTGCTTTACCTGTTGATGATGCCGCCTTTCCTTCAAGGAATGTTGATGATCGTGCAGTAGGGCTAGAGCAATCTTATGGGATGGAGCCAGTTATTGATGGTGGTTCTGGTCCATTTGTAAACATCCAAGGGAAGGCTCACCCTGGGCCAGTGGGCGCAAGGATCTCAACTGGAGTGCCTGCTACTGTTCAAGTTGATATTGATCACATATGGCGAGGGATAATTGCAAAAGGGGGAACACCAGTTTGTCAAGCAAGATGTGTACCTATTGGAAAAGGGATAGGGACTGAGCTTCCAGAAGTTGTTGATTGCTCAGCCAGGACTGGATTGGATATGCTAACAAAACATTATGCAGATGCTGTTGGTTTTGATGTTGTCTTTTTTCTGCCAGATAGTGAAGATGACTTTGCGTCATACACTGAATTTCTTCGCTACCTTGGTGCAAAAAACCGTGCTGGTGTTGCCAAATTTGTTGATGGGACCACTCTATTCTTGGTGCCTCCATCTGATTTCTTAACAAAGGTTTTAAAAGTCGCAGGGCCTGAACGTCTGTATGGTGTGGTTCTTAAGTTTCCATCTATGCCAAGTGGTACATCATTGCAACAGCCACTGCCCTTGTCTATACCTTCAAGTCAGTATATTGATAGGCTGCAGGTTCCTCCTTCTCAATTGGAGTATGGTCAGATCCCTGCAAAGGAGGAAGAAATTTTGCCTATGGATTATAATAGATTGTTGCATGATGAATCTAAAGTTCCTTCAAAACCATTTTATCCAGCTTCAAGTGGCACTTCTTTAGTTCAGTCTGTGCCCTCTGATTATACTTCTAGCAATACTGCTGCAGCGACCCAACCTGGAGTTACATTAACACCTGAGCTTATCGCCACTCTAGCCTCTTTGCTTCCTGGAACTACACAATCATCAGCCACTGATGGTGCCAAGTCAGCAGGAGGCTCCTCAACTGTGAAAGCTCCATTTCCTCCAGTTGTGCCCACTGACGCAAACCAATCTCATGTATGGAAACAGGACCATCAAATTGCAGATCCATCCAGTCATGTCCTTCAACAAGCAGCGAGTACGTACTATCAACCTTATCCACTATCATCTACTTACGGCCACCCTGGTCAAGTGGTGCATGGCAGTTCAAATATCCAAGATTCTGCTGCCAGCTTACAGCAGCAGGTTGCCATCTCGTCTAGACCCATGACTAACTTCTCAATGCCTTCTCAAAACGGACAAGTAACTTTATCCCTCCCAGTGAATCAACCATATCAGGTCGAAGTCTCCTCCAGCTCTCAGAAAGGCTATGGAGTGGCGCAGGGAATGGATGCCTCTGTTTTATATAGTTCTCAGGCTTTTCAGAATCCTAATATTTATGCTTCCTCGGCTAATCAAGTTCATAGTGCTAACCCTTCTCAGCAACAAACTGCTATGCCATATTCAGAAGACAAAGTGAACGCAGAGCTTCCAAATCAACAGTTTCAATCTGCTCTCCAAGGAGCTAGTCAGGGCACATCATCAGAAGTGGAGGCAGATAAAAACCAGAGGTACCAGTCAACACTACAGTTTGCCGCCAGTCTTCTCCTCCAAATACAGCAGCAGCAGCAGCAACAAACCCAAGGTGGTCGTGGGGCTGGAAATCAACAATGA 2994 0.4579 MPLPARSIKAAQEGGGSVKDFEDSETPSNNLWIGNLSHDVTESDLMALFAQYGALDSVTSYSSRSYSFVFFKRVEDAKAAKNALQGTLLRGIPMKIEFARPAKPCKQLWVGGISPTVTKEGLEAEFRKFGKIEDFKFVRDRNTAFVEYFNLDDATHAMKMMNGKHIGGDQIRVDFLRSQLSKKDMLLEYGQFQGKITGPPDFYSGQKRPLQTQPSVGRKGDGQPSNILWIGYPPSLQIDEQMLHNAMILFGEIERIKSFPSRHYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMYSSSELAPGKDYPGIFPGSKGTKPDMFLTEQTFRPLQMDVFGHNRPMVPNNFPSQLAPGVIVGPNVPLRPFGPQGSLEPLLSGSEFNELGTSQKFQDGSSKSPMGPNWKRPSPPAAGMLHSTPGVRPPTRSTSSAWDVLDINQFQRDSKRSRIDGALPVDDAAFPSRNVDDRAVGLEQSYGMEPVIDGGSGPFVNIQGKAHPGPVGARISTGVPATVQVDIDHIWRGIIAKGGTPVCQARCVPIGKGIGTELPEVVDCSARTGLDMLTKHYADAVGFDVVFFLPDSEDDFASYTEFLRYLGAKNRAGVAKFVDGTTLFLVPPSDFLTKVLKVAGPERLYGVVLKFPSMPSGTSLQQPLPLSIPSSQYIDRLQVPPSQLEYGQIPAKEEEILPMDYNRLLHDESKVPSKPFYPASSGTSLVQSVPSDYTSSNTAAATQPGVTLTPELIATLASLLPGTTQSSATDGAKSAGGSSTVKAPFPPVVPTDANQSHVWKQDHQIADPSSHVLQQAASTYYQPYPLSSTYGHPGQVVHGSSNIQDSAASLQQQVAISSRPMTNFSMPSQNGQVTLSLPVNQPYQVEVSSSSQKGYGVAQGMDASVLYSSQAFQNPNIYASSANQVHSANPSQQQTAMPYSEDKVNAELPNQQFQSALQGASQGTSSEVEADKNQRYQSTLQFAASLLLQIQQQQQQQTQGGRGAGNQQ 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju02g0020 997 SMART rrm1_1 107 174 IPR000504 GO:0003723
Alju02g0020 997 SMART rrm1_1 30 97 IPR000504 GO:0003723
Alju02g0020 997 SMART rrm1_1 227 295 IPR000504 GO:0003723
Alju02g0020 997 MobiDBLite consensus disorder prediction 206 220 - -
Alju02g0020 997 CDD RRM_SF 108 174 - -
Alju02g0020 997 CDD SPOC_FPA-like 519 639 - -
Alju02g0020 997 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 101 IPR000504 GO:0003723
Alju02g0020 997 FunFam Flowering time control protein FPA 21 103 - -
Alju02g0020 997 SUPERFAMILY RNA-binding domain, RBD 212 299 IPR035979 GO:0003676
Alju02g0020 997 MobiDBLite consensus disorder prediction 1 26 - -
Alju02g0020 997 PANTHER RNA RECOGNITION MOTIF-CONTAINING 20 99 - -
Alju02g0020 997 MobiDBLite consensus disorder prediction 385 401 - -
Alju02g0020 997 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 172 IPR000504 GO:0003723
Alju02g0020 997 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 91 IPR000504 GO:0003723
Alju02g0020 997 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 238 292 IPR000504 GO:0003723
Alju02g0020 997 CDD RRM_SF 31 97 - -
Alju02g0020 997 Gene3D - 215 303 IPR012677 -
Alju02g0020 997 Pfam SPOC domain 516 631 IPR012921 -
Alju02g0020 997 SUPERFAMILY RNA-binding domain, RBD 26 177 IPR035979 GO:0003676
Alju02g0020 997 MobiDBLite consensus disorder prediction 753 775 - -
Alju02g0020 997 MobiDBLite consensus disorder prediction 200 222 - -
Alju02g0020 997 FunFam flowering time control protein FPA 219 312 - -
Alju02g0020 997 MobiDBLite consensus disorder prediction 385 428 - -
Alju02g0020 997 Gene3D - 103 184 IPR012677 -
Alju02g0020 997 Gene3D - 11 102 IPR012677 -
Alju02g0020 997 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 178 IPR000504 GO:0003723
Alju02g0020 997 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 226 299 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju02g0020 Alju-ChrAlju02 332447 340584 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju02g0020 30 289 Eukaryotic Initiation Factors Gene Family AT2G23350 23.050 6.95e-09 57.8