Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g3803 ATGTCATTTAAAGCAATGAAGCAGCCAGACGGTACCGGAGCTGGGGCTGCCTCGGCAGCTGCTCCGCCGAACCCTTGCGATGGAGCAGAGAAGAAGAGCATAAATCCAGAGCTTTGGCAAGCTTGTGCGGGGCCACTGGTGAACTTGCCGCCAGCTGGTACTCACGTGGTGTACTTCCCTCAAGGTCATAGTGAACAGGTTGCAGCATCTTTAAAGAAGGATGTGGACGGTCAGATCCCAAACTATCCAAATCTCCCTTCAAAGTTACTCTGTCTCCTTCACAATGTCACCTTGCATGCTGACCCAGAAACTGATGAAGTATATGCTCAGATGACACTTCAACCAGTGCCTTCTTTTGACAAGGATGCATTATTAAGGTCTGATCTTGCTCTCAAGTCAAGTAAACCACAGCCGGAGTTCTTCTGTAAACAATTGACGGCGAGTGATACAAGTACACATGGAGGTTTTTCTGTCCCACGCCGTGCAGCAGAGAAGATTTTTCCTGCTCTTGATTACTCTATGCAACCTCCTGCCCAAGAACTTGTGGCAAGGGATTTGCATGACAATGTCTGGACATTTCGTCATATATATCGTGGACAACCTAAGCGTCACTTACTTACAACTGGATGGAGTCTATTTGTCAGTGGAAAGAGGCTATTTGCTGGAGACTCTGTTTTGTTTATAAGAGATGAAAAGCAGCAGCTTCTTCTGGGTATCAGGCGAGCTAACAGACAACCCACTAATTTATCATCTTCTGTGCTATCAAGTGATAGTATGCATATTGGAATTCTGGCAGCAGCAGCTCATGCAGCTGCTAACAACAGCCCCTTCACTGTGTTTTATAATCCTAGGGCTAGCCCCTCAGAATTTGTTATTCCTTTAGCAAAGTACTACAAGGCAGTGTATAGCCATCAAATATCACCTGGTATGCGCTTCCGAATGATGTTTGAAACTGAAGACTCAGGAACAAGAAGGTATATGGGAACAATTACGGGGATTTGTGACCTGGATCCTGTGAGGTGGAAAAACTCACAATGGCGCAATTTGCAGGTTGGTTGGGATGAATCAACTGCTGGAGAAAGACGAAGTAGGGTTTCAATCTGGGAAATTGAACCAGTGACAGCTCCATTTTTCATCTGCCCACCTCCATTCTTCAGGTCTAAGCGACCAAGACAACCAGGAATGCCTGATGAAGATCCTTCTGATTTTGACACCCTTTTTAAGCGGACAATGCCTTGGCTTGGTGATGATGTATGCATGAAGGATCCTCAAGCACTCCCTGGCCTAAGCTTAGTTCAATGGATGAACATGAAGCAAAATCCTGCTCTGTCTAGCTCATTACAGCCAAATTACATGCAATCCTTGTCTGGATCTGTTCTGCAAAACCTTCCTGGTGCAGACATTACCCGTCAGCTGGGATTTTGTGCCCCACAGATTTCTCAGTCAAGCAATGTAGCCTTCTATCCTCAGAGGTTACTTCAGACCCCACAAGTTGATCATCTTCAGAAGATACCATCTGTGTCTAGCTCGTTAGGACCAGTCATGCAGCCACCACAACAATTGGGTGATATCACTCAGCATCCAAGACAGAATATAGGAAATCAAATTCTACCACAGAGTCAAGTTCAGAGCCAACTTCTGCATGCTCAAAATATTGTTCAGCCTAACAATGTTCTTCAACAGCAGCAACCATCCATCCAAAATCATCAATTGCATGGAAATCTCTCTCAGAACCTGTCACAGCCGCAGCAGCAACAGACAGTAATGGGCCAGAGTCAACAGAAAAATCTTATTCAGTCCTCAATGCCTGATCATGTCAATCAACAGTTGCAGATGTCTGACAGCCAGATTCAGCTTCAATTATTACAGAAGCTTCAACAGCAACAGCAAACACTCTTGGCACAGCAGTCAGTATTGCAGCAGTCTACTCAACTTGGTCAAATCCCAGACCAGCAGAGGCAGCTTTTAGATCCAACTCACAACTTCTCAAAGGCCCTAACTTCAAGTCAAGTGCTAGAAATTCCTCCAATACTTCAAAACTCACTTCCTGATTCTAATTCTATTCCACCTCAGATGATGAAGAATAGTGGCCAGACCAATAATGTTCAGTTCTCTCATCCAACCCAACAGGCAAAGCTTCAACAACAGCAACCTGGTACATTGTCTGAGATGTCTGGTCATGTGGGACTTCCCCCTGCTCCTACCGCCAACAAACTCTCTGCGGCTGGTAGTAGTATATTAACTGGAGCAGCTGGAGCAGGGCATTCTGTAATTACTGATGACATTCCATCTTGTTCCACTTCACCTTCCACTAATAACTGTGCCAATACGCTTCCACATATGCATTCCCTGATCCATAGGAACACAATGATAGGGGATGACATGGCTCAATCTGCAGCCAGGATCTTAAGTCCAAGTGCCTTGGAGACCATGTCTTCAAATGCAAGCTTGGTGAAAGATTTTCAGCCAAAGTCTGAAGTTAAGCCCTCTTTAAATGTATCCAAAAGTCAAAATCAAGGGAATTTTTCTGCTCATGTATACTTAAATGGTGGAGCTGCACAGACAGATTATTTGGATACATCATCTTCTACAACTTCAGTTAGCCTTTCTCGAAATGACACTTATATGCATCACAATAACAACCCATTATCTTTTAATCCGCAGTCAATGTTGTTTAGAGACAATAATCAAGATGGGGAAATTCAGCTAGATGCTAGGAGCAATGTTCCATTTGGCAATAATATTGATGGTCAATTGGGAATGCCTCTAAATCCAGATTCTCTTTTGACCAAAGTCACAATAGGGCTGGGAAAGGAATTGTCAAATAACTTTTCTTCAGGAGGCATGGTTGGTAACTATGAGGAGAACAGAGATGCTCAGCAGGAACTTTCTTCGTCAATTGTTTCACAGTCATTTGGAGTCCCTGATATGACCTTTAATTCAATTGATCCCACAATAAATGATGCTAGTTTCTTAAATAGGGGTACATGGGCCCCGCCTCCTCCTCCCCCACCACAATTTCAGAGGATGAGAACATACACCAAGGTATACAAACGTGGAGCTGTTGGTAGGTCTATAGACATAACCCGGTATTCAGGTTATGAGGAGCTTAAACAGGATTTGGCACGCAGATTTGGCATAGAGGGACAGTTGGAGGACCGGCAAAGGATAGGCTGGAAACTTGTATATGTAGATCATGAAAATGATGTTTTGCTAGTGGGGGATGACCCGTGGGAGGAGTTTGTGAACTGCGTCCGCTGCATTAAGATACTTTCTCCTCAAGAGGTGCAACAGATGAGTTTGGATGGAGATTTTGGCAATGGTGGCCTTCCAAATCAAGCCTGTAGCAGCTCTGATGGTGGAAATACCTAA 3372 0.4434 MSFKAMKQPDGTGAGAASAAAPPNPCDGAEKKSINPELWQACAGPLVNLPPAGTHVVYFPQGHSEQVAASLKKDVDGQIPNYPNLPSKLLCLLHNVTLHADPETDEVYAQMTLQPVPSFDKDALLRSDLALKSSKPQPEFFCKQLTASDTSTHGGFSVPRRAAEKIFPALDYSMQPPAQELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVYSHQISPGMRFRMMFETEDSGTRRYMGTITGICDLDPVRWKNSQWRNLQVGWDESTAGERRSRVSIWEIEPVTAPFFICPPPFFRSKRPRQPGMPDEDPSDFDTLFKRTMPWLGDDVCMKDPQALPGLSLVQWMNMKQNPALSSSLQPNYMQSLSGSVLQNLPGADITRQLGFCAPQISQSSNVAFYPQRLLQTPQVDHLQKIPSVSSSLGPVMQPPQQLGDITQHPRQNIGNQILPQSQVQSQLLHAQNIVQPNNVLQQQQPSIQNHQLHGNLSQNLSQPQQQQTVMGQSQQKNLIQSSMPDHVNQQLQMSDSQIQLQLLQKLQQQQQTLLAQQSVLQQSTQLGQIPDQQRQLLDPTHNFSKALTSSQVLEIPPILQNSLPDSNSIPPQMMKNSGQTNNVQFSHPTQQAKLQQQQPGTLSEMSGHVGLPPAPTANKLSAAGSSILTGAAGAGHSVITDDIPSCSTSPSTNNCANTLPHMHSLIHRNTMIGDDMAQSAARILSPSALETMSSNASLVKDFQPKSEVKPSLNVSKSQNQGNFSAHVYLNGGAAQTDYLDTSSSTTSVSLSRNDTYMHHNNNPLSFNPQSMLFRDNNQDGEIQLDARSNVPFGNNIDGQLGMPLNPDSLLTKVTIGLGKELSNNFSSGGMVGNYEENRDAQQELSSSIVSQSFGVPDMTFNSIDPTINDASFLNRGTWAPPPPPPPQFQRMRTYTKVYKRGAVGRSIDITRYSGYEELKQDLARRFGIEGQLEDRQRIGWKLVYVDHENDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDFGNGGLPNQACSSSDGGNT 1123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g3803 1123 MobiDBLite consensus disorder prediction 680 723 - -
Alju01g3803 1123 Gene3D - 139 242 IPR015300 -
Alju01g3803 1123 Pfam Auxin response factor 267 350 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Alju01g3803 1123 Pfam B3 DNA binding domain 141 242 IPR003340 GO:0003677
Alju01g3803 1123 ProSiteProfiles B3 DNA-binding domain profile. 141 243 IPR003340 GO:0003677
Alju01g3803 1123 MobiDBLite consensus disorder prediction 1 32 - -
Alju01g3803 1123 FunFam Auxin response factor 1006 1100 - -
Alju01g3803 1123 ProSiteProfiles PB1 domain profile. 1011 1095 IPR000270 GO:0005515
Alju01g3803 1123 Pfam AUX/IAA family 1011 1096 IPR033389 -
Alju01g3803 1123 Gene3D - 1006 1100 - -
Alju01g3803 1123 SUPERFAMILY CAD & PB1 domains 1024 1089 - -
Alju01g3803 1123 Gene3D - 305 376 - -
Alju01g3803 1123 FunFam Auxin response factor 305 376 - -
Alju01g3803 1123 FunFam Auxin response factor 139 243 - -
Alju01g3803 1123 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 30 628 IPR044835 GO:0003677|GO:0006355|GO:0009725
Alju01g3803 1123 SMART B3_2 141 243 IPR003340 GO:0003677
Alju01g3803 1123 SUPERFAMILY DNA-binding pseudobarrel domain 130 270 IPR015300 -
Alju01g3803 1123 CDD B3_DNA 140 232 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g3803 Alju-ChrAlju01 68110651 68116682 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g3803 29 487 B3 DNA Binding Superfamily AT1G19220 73.593 0.0 669
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Alju01g3803 B3 1.7e-19 CL0405