Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g3773 ATGTGTCAGGTTCACCCTTCTTCTTCTTCATCTTCATTGTTCTACACCAATCTTAAAATTCCCATATTTATGCAGGAAACAAAAATGGGTCTTCTTCCTTTTGGCTTTCTTCTTCTGGGACTTGTCTCCTCTGTTCATGGATATGGCTATGGAGGCTGGAACAATGCTCATGCAACTTTCTATGGGGGTAGTGATGCTTCAGGAACTATGGGAGGGGCATGTGGGTATGGAAATCTGTACAGCCAAGGGTATGGAACAAACACAGCAGCTGTGAGCAGTGCTCTGTTCAACAATGGACTGAGCTGTGGTGCATGTTATCAGATTAGATGCGTGAATGACCCACAATGGTGTCTCCCTGGAACTATTGTGGTCACTGCCACTAATTTTTGCCCACCAGGTGGTTGGTGTGACCCTCCAAACCTCCATTTTGATCTTTCCCAACCTGTTTTCCAGCACATTGCTCAGTACAAAGCTGGCATTGTTCCTGTCAGTTACAGAAGGGTAAGGTGTAGGAGAAGAGGAGGGATAAGATTTGCCATTAATGGACATTCATACTTCAATTTAGTGCTGGTAACAAACGTTGGAGGAGCTGGAGATGTTCATGCAGTGGCAATCAGAGGGACAAGGACTAGATGGCAATCCATGTCCAGAAACTGGGGCCAAAACTGGCAGAGCAATTCTTACCTCAATGATCAGGCCCTTTCCTTCTTGGTCACCACCAGCGACGGTCGCTCTCTCGTCTCTTACAATGTTGCTCCACCCTCTTGGTCCTTTGGCCAGACCTATACCGGACGCCAATTTCGATACTGA 810 0.4667 MCQVHPSSSSSSLFYTNLKIPIFMQETKMGLLPFGFLLLGLVSSVHGYGYGGWNNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAAVSSALFNNGLSCGACYQIRCVNDPQWCLPGTIVVTATNFCPPGGWCDPPNLHFDLSQPVFQHIAQYKAGIVPVSYRRVRCRRRGGIRFAINGHSYFNLVLVTNVGGAGDVHAVAIRGTRTRWQSMSRNWGQNWQSNSYLNDQALSFLVTTSDGRSLVSYNVAPPSWSFGQTYTGRQFRY 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g3773 269 Pfam Lytic transglycolase 88 165 IPR009009 -
Alju01g3773 269 Gene3D - 175 267 IPR036749 -
Alju01g3773 269 CDD DPBB_EXPA_N 52 165 - -
Alju01g3773 269 PRINTS Expansin signature 110 121 IPR002963 GO:0009664
Alju01g3773 269 PRINTS Expansin signature 133 150 IPR002963 GO:0009664
Alju01g3773 269 PRINTS Expansin signature 186 207 IPR002963 GO:0009664
Alju01g3773 269 PRINTS Expansin signature 221 242 IPR002963 GO:0009664
Alju01g3773 269 PRINTS Expansin signature 83 97 IPR002963 GO:0009664
Alju01g3773 269 PRINTS Expansin signature 122 132 IPR002963 GO:0009664
Alju01g3773 269 PRINTS Expansin signature 250 266 IPR002963 GO:0009664
Alju01g3773 269 PRINTS Expansin signature 150 163 IPR002963 GO:0009664
Alju01g3773 269 PRINTS Expansin signature 174 186 IPR002963 GO:0009664
Alju01g3773 269 SMART dpbb_1 88 165 IPR007112 -
Alju01g3773 269 Gene3D - 42 171 IPR036908 -
Alju01g3773 269 PANTHER EXPANSIN-A15 48 267 IPR002963 GO:0009664
Alju01g3773 269 FunFam Expansin 42 171 - -
Alju01g3773 269 FunFam Expansin 175 267 - -
Alju01g3773 269 SUPERFAMILY Barwin-like endoglucanases 52 193 IPR036908 -
Alju01g3773 269 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 185 264 IPR007117 -
Alju01g3773 269 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 71 175 IPR007112 -
Alju01g3773 269 Pfam Expansin C-terminal domain 176 253 IPR007117 -
Alju01g3773 269 SUPERFAMILY PHL pollen allergen 172 264 IPR036749 -
Alju01g3773 269 PRINTS Expansin/Lol pI family signature 158 174 IPR007118 GO:0005576
Alju01g3773 269 PRINTS Expansin/Lol pI family signature 92 110 IPR007118 GO:0005576
Alju01g3773 269 PRINTS Expansin/Lol pI family signature 250 264 IPR007118 GO:0005576
Alju01g3773 269 PRINTS Expansin/Lol pI family signature 212 226 IPR007118 GO:0005576
Alju01g3773 269 PRINTS Expansin/Lol pI family signature 52 67 IPR007118 GO:0005576
Alju01g3773 269 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g3773 Alju-ChrAlju01 67592492 67594411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g3773 28 268 Expansin Gene Family AT2G03090 77.200 2.32e-139 390