Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g3768 ATGGGTCGATCACCATGCTGTGACAAGGTGGGTTTAAAGAAAGGACCGTGGACTCCCGAGGAAGATCAGAAACTTCTTGCTTATATTGAAGAACATGGCCATGGAAGCTGGAGAGCCTTGCCAGTAAAAGCTGGCCTCCAGAGGTGCGGCAAGAGCTGCAGACTGAGGTGGACCAATTATCTCAGGCCTGATATTAAAAGAGGAAAGTTCAGTTTACAAGAAGAGCAAACCATCATCCAACTCCATGCTCTCCTAGGAAACAGGTGGTCAGCTATAGCCACGCACTTACCAAAGAGAACAGATAATGAGATCAAGAACTACTGGAATACTCATCTCAAGAAAAGATTAACCAAAATGGGAATTGACCCTGTCACCCACAAACCCAAGAATGATGCCCTTGTGCCCCGCGGCGACGGCGGCCAGTCCAAGACGGCGGCCAACCTTAGCCACATGGCTCAATGGGAGAGTGCTCGGCTTGAAGCTGAAGCAAGGTTGGCTAAAGAATCCAAACTACTACGTTCATCACTATCACTCACATCTTCATCTTCTGCTTCTGCCTCAGCTTCATCATCTCATTATCCAGTTGTCATCAAGCCTTGGAATAATAATAATAATGGTGGTGGGTGGCTAAAATCCACTGATCAAAGCATTAACAGTGGCGGCGGCGGCCTTGAATCTCCAAAGTCTACTCTGACTCTCTCTGAAAACGCCCCACCACCTATTATGCCTATGATTGAGTTTGTGGGCACTTCTGGTTCTTGTGAGGCAGCAGAAATGGTGAAACAGCGAGAGTGGAATCACAGTAATGGTTTGGAGAATAATTCAATGTCTTATGCTCCGTCCAGCCTGCATCATGAGCTGACCATTTCCAACATGGAAGGCACTTGGAACTCTCAAGAGCCTCTTCTTAGGATTGGCACTGGTGGCGATGCTGTTGCTGAGGATCAGGGATTCACCAATCTGTTGCTCAGTACAAACTCCGACGACCGGAGCTTGTCGGAGGAGGACGGCGGAGGAGACTCTAACAATTGGGATGGTGGAGGTGCTGGTGGTGCCTGTGGCCTCTTGTGTGAAGATAATAAGAACTACTGGAACAGCATTCTTAATTTAGTTAACTCTAATTCGCCTTCTCATTCCCCTATGTTCTGA 1149 0.4778 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPVKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPKNDALVPRGDGGQSKTAANLSHMAQWESARLEAEARLAKESKLLRSSLSLTSSSSASASASSSHYPVVIKPWNNNNNGGGWLKSTDQSINSGGGGLESPKSTLTLSENAPPPIMPMIEFVGTSGSCEAAEMVKQREWNHSNGLENNSMSYAPSSLHHELTISNMEGTWNSQEPLLRIGTGGDAVAEDQGFTNLLLSTNSDDRSLSEEDGGGDSNNWDGGGAGGACGLLCEDNKNYWNSILNLVNSNSPSHSPMF 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g3768 382 CDD SANT 69 112 IPR001005 -
Alju01g3768 382 MobiDBLite consensus disorder prediction 325 345 - -
Alju01g3768 382 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Alju01g3768 382 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Alju01g3768 382 CDD SANT 16 61 IPR001005 -
Alju01g3768 382 Gene3D - 69 116 - -
Alju01g3768 382 SMART sant 66 114 IPR001005 -
Alju01g3768 382 SMART sant 13 63 IPR001005 -
Alju01g3768 382 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Alju01g3768 382 MobiDBLite consensus disorder prediction 122 146 - -
Alju01g3768 382 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 257 - -
Alju01g3768 382 Gene3D - 13 66 - -
Alju01g3768 382 FunFam MYB transcription factor 69 116 - -
Alju01g3768 382 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Alju01g3768 382 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Alju01g3768 382 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Alju01g3768 382 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Alju01g3768 382 FunFam MYB-related transcription factor 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g3768 Alju-ChrAlju01 67521170 67524086 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g3768 1 382 MYB Transcription Factor Family AT3G01140 54.264 1.14e-118 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju01g3768 Myb_DNA-binding 5.6e-15 CL0123