Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g3764 ATGGCCAGGAAGAGAAAGAACATCAGTACTGTTGAAGAAGCAGGGGAAGAGAAGAGTACTGGCAGTGAGGGAAGCATGGGGTGGGAGCAGATGGTGAAGGAGGCTGCCGTACTGGGAGGTCTCCGGCGAGCCCGTAAGCGATTCGTGGGGGTCCGGCAGCGGCCTTCAGGGCGGTGGGTGGCGGAGATAAAAGACACCATACAGAAGATAAGAGTGTGGCTTGGCACCTTTGACACTGCAGAAGAAGCAGCCAGAGCCTATGATGAAGCTGCTTGCTTGCTAAGAGGAGCCAACACCAGAACAAATTTCTGGCCTTGTCAATCTCAATCCAATTCTTCAAACCCTGCTCTTTCTTCAAAAATTACTAATCTTCTCCTTCAAAGACTTCAAGCAAGAAACAACCAAAACCAAAACTTATTACCTTCTTCCTCCTCCTCCTCTGTTTCTCCCCTGCTTATAAGTCAGCAACGGAACCAAGAAGCAGAGGAAAAAACAGAGTTTTCAATGGACCAGTTCACTGACTTTCTTAATGATCCTGAGGATTACACAACATCAAGCAACAACATTGAACAATTCCATTACATTACTCGTAGTTTCGAGTCATGTTTGACTGAGAACAAAGAGTGCAAGGAAAGAGAAGAGACAATCGGCGATTCAGGTGAGGAGAAAGAGGAAGAAAGCAGTATGGAGGTTGTGATGGGAATGCAGGATTTTGAGTTTCTGGACTGTGTGATGCCATCATCATGGAACAACTATTTGCCATTCGAGATGCCTCGAGAAATGGAGGAGGAGGAGGACGACAACGAGGAGGGAGAGAGCTATGGTGGTGGTGAGCCTTGTATGCTGAGAGCTGCCATGAAGAGGATGAAGTATGAGAGGAAGTTCTCTGCTTCTCTTTATGCCTTCAATGGGATATCAGAATGCTTGAAGTTGAAAATTGGATCCTCAAACTTGAAGGGAAGAACAGTTTCTGAGCAGCTATCTAGTCTCCAAATGGCATGTTCCAGTAAGAACAGAGTTGAGAATAACAACATCAATACCAAAGAAGAAGAAAGCCCACAAGCGTCAATTGAAATTTCTGAGTCCCCTTCTTCTTCTTCTTCTGGTGATGATAGTGAATTGATTTGGAGTTCAATAGATCTTCCTCCAATTGCTTTTCAGTGGCAGGAAAGAAAACTAAAAGAAAACGACGTCGTTTGCGTGACAATACAAAAGCCCTGTAAAATCCCCAATTTCCCTTCTGGCCTTCGCAACGCCGGTTGGGCTCGCAGCACCGCGGTTCCCTCAGCCCGTTCATCTTCCGGTTCTCGCACTCTCCAACTGGTTCGCCTTCGCTCGCATCGGCTCGGCTTGTTCCGGTATTTAGTTTTTAACTGCAAACTGATTTTGACGATTCATGGTGCTGTCTTGCTGTTTAGGTTTTAG 1425 0.4618 MARKRKNISTVEEAGEEKSTGSEGSMGWEQMVKEAAVLGGLRRARKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCQSQSNSSNPALSSKITNLLLQRLQARNNQNQNLLPSSSSSSVSPLLISQQRNQEAEEKTEFSMDQFTDFLNDPEDYTTSSNNIEQFHYITRSFESCLTENKECKEREETIGDSGEEKEEESSMEVVMGMQDFEFLDCVMPSSWNNYLPFEMPREMEEEEDDNEEGESYGGGEPCMLRAAMKRMKYERKFSASLYAFNGISECLKLKIGSSNLKGRTVSEQLSSLQMACSSKNRVENNNINTKEEESPQASIEISESPSSSSSGDDSELIWSSIDLPPIAFQWQERKLKENDVVCVTIQKPCKIPNFPSGLRNAGWARSTAVPSARSSSGSRTLQLVRLRSHRLGLFRYLVFNCKLILTIHGAVLLFRF 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g3764 474 Pfam AP2 domain 47 96 IPR001471 GO:0003700|GO:0006355
Alju01g3764 474 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Alju01g3764 474 MobiDBLite consensus disorder prediction 137 165 - -
Alju01g3764 474 MobiDBLite consensus disorder prediction 338 371 - -
Alju01g3764 474 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Alju01g3764 474 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Alju01g3764 474 SUPERFAMILY DNA-binding domain 47 104 IPR016177 GO:0003677
Alju01g3764 474 FunFam ethylene-responsive transcription factor RAP2-11 46 105 - -
Alju01g3764 474 MobiDBLite consensus disorder prediction 1 19 - -
Alju01g3764 474 MobiDBLite consensus disorder prediction 137 158 - -
Alju01g3764 474 MobiDBLite consensus disorder prediction 1 26 - -
Alju01g3764 474 Gene3D AP2/ERF domain 46 104 IPR036955 GO:0003700|GO:0006355
Alju01g3764 474 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Alju01g3764 474 CDD AP2 46 103 IPR001471 GO:0003700|GO:0006355
Alju01g3764 474 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 25 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g3764 Alju-ChrAlju01 67473329 67475482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g3764 45 125 AP2-EREBP Transcription Factor Family AT5G19790 72.840 3.17e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju01g3764 AP2 9.8e-15 CL0081