Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g3722 ATGAAGAGAGAAAGATCAGATGATCACAGCATCACCATGGCCAACTGCTTGATGCTGCTTTCCGAGGCCGCGGCTTCCTTCGGCTCCGTCTCCTCCTCCGCCGCCGCCGCCCGTGTCTTCGTCTGCAAGACCTGTAACCGCCAGTTCTCATCCTTCCAGGCGCTCGGCGGCCACCGTGCCAGCCACAAGAAGCCGAGGATAATTGCCGGTGAGGATAGTAACAACGGCGACGACCTTCTTCTTCATACTTCTCCGGCTAAGCCTAAAACTCATGAGTGCTCAATTTGTGGATTGGAGTTCCCCATAGGTCAGGCTTTGGGCGGTCACATGAGAAGACACAGAGCTCCAACATCTCATAATAATAATGATAGTAAGAACTCGTCATCGTCGTCGTCAAGCGGAGATTTTGATTCAAATACAAAAAAGAAGAAGAAAGAGAAGAGCAAAAGGGTTCTGTTTCTGGACTTGAACTTGACGCCGCTTGAGAACGATTTGGAGATTTTAGGGATAAATACGTCAACTCCTTTGGTAGTTACTCTTTAG 543 0.4936 MKRERSDDHSITMANCLMLLSEAAASFGSVSSSAAAARVFVCKTCNRQFSSFQALGGHRASHKKPRIIAGEDSNNGDDLLLHTSPAKPKTHECSICGLEFPIGQALGGHMRRHRAPTSHNNNDSKNSSSSSSSGDFDSNTKKKKKEKSKRVLFLDLNLTPLENDLEILGINTSTPLVVTL 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g3722 180 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Alju01g3722 180 SUPERFAMILY beta-beta-alpha zinc fingers 38 113 IPR036236 -
Alju01g3722 180 Gene3D Classic Zinc Finger 37 113 - -
Alju01g3722 180 PANTHER ZINC FINGER PROTEIN ZAT5 8 163 - -
Alju01g3722 180 Pfam C2H2-type zinc finger 91 116 - -
Alju01g3722 180 Pfam C2H2-type zinc finger 39 65 - -
Alju01g3722 180 MobiDBLite consensus disorder prediction 120 136 - -
Alju01g3722 180 MobiDBLite consensus disorder prediction 109 144 - -
Alju01g3722 180 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 118 IPR013087 -
Alju01g3722 180 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Alju01g3722 180 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Alju01g3722 180 SMART c2h2final6 40 62 IPR013087 -
Alju01g3722 180 SMART c2h2final6 91 113 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g3722 Alju-ChrAlju01 66943627 66944169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g3722 1 164 C2H2 Transcription Factor Family AT2G28710 45.562 7.12e-37 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju01g3722 zf-C2H2_6 1.3e-10 CL0361