Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g3680 ATGACTCAGTGGACTCGTCATGAGGATAAGCTCCTTGAGCAAGCTATAGTTCTGTTTCCCGACAATTGCCCTAATCGATGGGAGAAGATTGCTGACGCCGTGCCTGGAGCCACCGTTGATTTGGTCTGGCAACGTTATCATGATCTGATACACGACGTCGCCGAGATTGATGCCGGTCGGGTACCGATTCCGGCCTTCCCTGACTTTTCCTCTGATACTGAGCCTTCTTCCTCTGATTGGAACTCGGCTAATCAAATTTCGTTCAACTCGAAGCCGCACAAGAATATCGACTCTGACAGAAAGAAAGGCACGCCTTGGACTGAGGAAGAACATAGGCTATTCCTCAGAGGATTGGAGAAATATGGCAAGGGAGATTGGAGAAGCATTTCAAGAAATGTTGTGGTGACAAGAACACCAACTCAGGTAGCTAGCCATGCTCAGAAATATTTTAATCGGCAAAGGGAAAAATCAAAGAAAGAGAGGAAAAGAGCAAGCATCCATGACATCACAACTGCAGACACCAACGTTGAGCTTCTAGATCAAAACCAGATTGCTCCTTCAAGCCTTCAAACTCAGATTGTCTCTTCGGGCCTTCCAGTGCATAATCAATCATCACCAATGCTTCAGTTTAACCCTCAGAATCCTTCAATTGATCAATCTCTTGGGTTTGGGTACCCAAACTATGCTTTTCCTATCTAG 699 0.4578 MTQWTRHEDKLLEQAIVLFPDNCPNRWEKIADAVPGATVDLVWQRYHDLIHDVAEIDAGRVPIPAFPDFSSDTEPSSSDWNSANQISFNSKPHKNIDSDRKKGTPWTEEEHRLFLRGLEKYGKGDWRSISRNVVVTRTPTQVASHAQKYFNRQREKSKKERKRASIHDITTADTNVELLDQNQIAPSSLQTQIVSSGLPVHNQSSPMLQFNPQNPSIDQSLGFGYPNYAFPI 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g3680 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 54 IPR017930 -
Alju01g3680 232 CDD SANT 4 39 IPR001005 -
Alju01g3680 232 CDD SANT 105 150 IPR001005 -
Alju01g3680 232 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Alju01g3680 232 FunFam transcription factor MYB1R1 104 155 - -
Alju01g3680 232 ProSiteProfiles SANT domain profile. 101 154 IPR017884 -
Alju01g3680 232 MobiDBLite consensus disorder prediction 93 107 - -
Alju01g3680 232 MobiDBLite consensus disorder prediction 70 92 - -
Alju01g3680 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 98 154 IPR017930 -
Alju01g3680 232 SMART sant 102 152 IPR001005 -
Alju01g3680 232 SMART sant 1 52 IPR001005 -
Alju01g3680 232 SUPERFAMILY Homeodomain-like 100 154 IPR009057 -
Alju01g3680 232 Gene3D - 1 63 - -
Alju01g3680 232 FunFam Transcription factor SRM1 1 63 - -
Alju01g3680 232 SUPERFAMILY Homeodomain-like 3 56 IPR009057 -
Alju01g3680 232 Gene3D - 104 155 - -
Alju01g3680 232 ProSiteProfiles Myb-like domain profile. 98 150 IPR001005 -
Alju01g3680 232 MobiDBLite consensus disorder prediction 67 107 - -
Alju01g3680 232 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 2 215 IPR043363 -
Alju01g3680 232 NCBIfam myb-like DNA-binding domain, SHAQKYF class 101 153 IPR006447 GO:0003677
Alju01g3680 232 Pfam Myb-like DNA-binding domain 105 150 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g3680 Alju-ChrAlju01 66207232 66208894 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Alju01g3680 Myb_DNA-binding 2.3e-13 CL0123