Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g3658 ATGTCAAAAGAGATTGTGGAAGATGATTACATCACCGATGAATACAAGAGAAATGTATCGTTCAATAAAAGGAAGGCCAATATCATGAAAAAAGTAAGTGAACTTAGCATCCTTTGTGGTGTTGAGGCCGGAGCAATAATTTTCAGTGGTAACCCATCTGATCTTACTCCGGAAGTTTGGCCCGACCATGAAGGTGTCCAGCAACTGATCGAGAGGTGCCATGCTACGCCTGTCCCGCAAAGGACCTTGACCACAGATGAATCAATACAACAAAGGATCAACATAGCAAAAGAACTTCTAATGAGAAAACGGCAAGAAAATCATGTAGAAGAGATTTACCAGCAAATGATCCAATGTTTAGCAGGGAAAGCAATGCCCAACCGTACAAATTGGAATGATATGAAGATGTTAGTTGAGCAGACTTCGAAGAACAATGCCAACATTAAGTAA 450 0.4067 MSKEIVEDDYITDEYKRNVSFNKRKANIMKKVSELSILCGVEAGAIIFSGNPSDLTPEVWPDHEGVQQLIERCHATPVPQRTLTTDESIQQRINIAKELLMRKRQENHVEEIYQQMIQCLAGKAMPNRTNWNDMKMLVEQTSKNNANIK 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g3658 149 Gene3D - 13 115 IPR036879 GO:0003677|GO:0046983
Alju01g3658 149 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Alju01g3658 149 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Alju01g3658 149 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Alju01g3658 149 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Alju01g3658 149 SUPERFAMILY SRF-like 6 95 IPR036879 GO:0003677|GO:0046983
Alju01g3658 149 CDD MADS_SRF_like 6 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Alju01g3658 149 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Alju01g3658 149 PANTHER MADS BOX PROTEIN 7 127 - -
Alju01g3658 149 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g3658 Alju-ChrAlju01 65863845 65864294 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g3658 11 124 Type I MADS-box Gene Family AT1G65300 38.462 7.49e-20 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Alju01g3658 SRF-TF 4.8e-16 No_clan