Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g3656 ATGTCTAAAGAGGTGATGAATGATGATTACATCACTAATAAATCCAAGAGAAACATATCATTCAATAAAAGGAAGGCCAATATCATGAAAAAAATAAGCGAACTTAGCATCCTTTGCGGTGTTGAGGCTGGATCAATCATTTTCAGTGGTGATCCGTCTGATCCTACACCAGAGGTTTGGCCGAACCATGAAGGTGTCCAGCAACTAATCGAGAGGTGCCAAACTAGGCCTGTAGCGCAAAGGACCTTGACCGTAGATGAATCAATACAGCAAAGGATCAACATGGCGAAAGAACTTCTAATGAGAAGACGGCATGAAAATCATGTAGAAGAGATTTCCCAACAAATGATCCAATGTTTAACAGGGAAAGCAGTGCCCGACCCTACAAATTGGAATGATATGAAGATATCAGTTGAGCAGACTTTGAAGAACAATGCCAACAAGTAA 447 0.4072 MSKEVMNDDYITNKSKRNISFNKRKANIMKKISELSILCGVEAGSIIFSGDPSDPTPEVWPNHEGVQQLIERCQTRPVAQRTLTVDESIQQRINMAKELLMRRRHENHVEEISQQMIQCLTGKAVPDPTNWNDMKISVEQTLKNNANK 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g3656 148 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Alju01g3656 148 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Alju01g3656 148 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 49 IPR002100 GO:0003677|GO:0046983
Alju01g3656 148 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Alju01g3656 148 PANTHER MADS BOX PROTEIN 10 123 - -
Alju01g3656 148 CDD MADS_SRF_like 9 77 IPR033897 GO:0000981|GO:0000987|GO:0045944
Alju01g3656 148 SUPERFAMILY SRF-like 9 96 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g3656 Alju-ChrAlju01 65787504 65787950 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g3656 1 144 Type I MADS-box Gene Family AT5G48670 39.333 4.36e-21 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Alju01g3656 SRF-TF 4.1e-16 No_clan