Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g3641 ATGGACGTTCTATCGATTTCGCCTTCGTTAAATGAACCTATAGCCTTTTCCATTCTCAAACCTCATAGAATCCAACTTCGCCACCTTCCCTTAAATCCCAGATTGCGCAATTCATCAAATTACACAACGCATTTCAAGCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTCTTCCTGTTTCTGTTCTAGAATAGCGGCAACTTCAGTAACTACTTTCACTCCCTTAGCTTCTTCCTCCACTGAGAATCGCCATTGGATAGTAATAATGGAAAAGCCTCCACTAGGGGTTGATTCCAAGCAGCAAGTCATTGATTATTACGTTCAAACTCTGCAAAGAGTCATTGGCAGTGAGAAAGAGGCTCAAATGTGTATTTACGATGCTTCGTGGGATACTCACTACGGTTTTTGTTGTGACATCGATGAAGTAACTTCTTCCCAGCTCGCTTGTTTACCTGGGGTCATTTCGGTTAAGCCTGATCCAGATTTCAGCTCTCCAGAAAAGGATTATAGGTCATCAAATGGGCATGGAGATAATTTGTCAAAGCTACAAACTGGAGCCACTTTGTTGTTCCCTGCTGGGAATTCAAAGCATTGGCTTGTTCGAATGGATAAACCAGGGGTTGGGGTAGTTACAAAGGCCCAAGTTGTGGATTTTTATGCTAAAATTCTAACTAAAGTCATGGGAAATGAGAAGGATGCACAAATGTGTATATACCATGTTTCTTGGAAAAACAACTTTGGCTTTTGTTGCGAACTTGATGAGGATTGTGCACGAGAGTTAGCTGGCGTCCCTGGTGTCTTATCAGTTCAGCCAGATAATAATTTTGAGTCAGAAATTAAAGATTATGCAGGTGTAAACTTAGGAAACAGTTTGAATGCGCTGAACTCTGAAGCAAGTGAGGCAACTCCTTTGAAAACAAAAAAGCTTTTTGTGACAGGCCTATCATTTTATACATCAGAGAAAACTTTACGTGCTGCATTTGAAGGCTATGGTGAGCTTGTCGAAGTTAAAGTTATTATGGATAAAATTTCTAAGAGGTCCAAGGGTTATGCATTTGTGGAATACACAACAGAGGAGGCTGCAGCTGCAGCATTGAAGGAGATGAATGGAAAGATTATCAATGGCTGGATGATAGTTGTGGATGTTGCCAAGCCTAGCCCGCCAAAATTTAATAGGGGTCGTGCCAGACCTGTAGCCTGA 1203 0.4131 MDVLSISPSLNEPIAFSILKPHRIQLRHLPLNPRLRNSSNYTTHFKLSSSSSSSSSSSSCFCSRIAATSVTTFTPLASSSTENRHWIVIMEKPPLGVDSKQQVIDYYVQTLQRVIGSEKEAQMCIYDASWDTHYGFCCDIDEVTSSQLACLPGVISVKPDPDFSSPEKDYRSSNGHGDNLSKLQTGATLLFPAGNSKHWLVRMDKPGVGVVTKAQVVDFYAKILTKVMGNEKDAQMCIYHVSWKNNFGFCCELDEDCARELAGVPGVLSVQPDNNFESEIKDYAGVNLGNSLNALNSEASEATPLKTKKLFVTGLSFYTSEKTLRAAFEGYGELVEVKVIMDKISKRSKGYAFVEYTTEEAAAAALKEMNGKIINGWMIVVDVAKPSPPKFNRGRARPVA 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g3641 400 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 188 377 IPR039206 GO:0016554
Alju01g3641 400 FunFam Organelle RRM domain-containing protein 1, chloroplastic 187 276 - -
Alju01g3641 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 308 386 IPR000504 GO:0003723
Alju01g3641 400 Gene3D - 291 399 IPR012677 -
Alju01g3641 400 SUPERFAMILY RNA-binding domain, RBD 298 396 IPR035979 GO:0003676
Alju01g3641 400 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 68 164 IPR037045 -
Alju01g3641 400 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 192 277 IPR037045 -
Alju01g3641 400 SMART rrm1_1 309 382 IPR000504 GO:0003723
Alju01g3641 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 310 376 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g3641 Alju-ChrAlju01 65675470 65678883 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g3641 305 399 C2H2 Transcription Factor Family AT2G19380 36.082 1.04e-12 67.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g3641 01 65675470 65678883 Alju01g3641 01 65675470 65678883 ECH