Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g3640 ATGTATTGCGATTTTTTGGAGCATGCAGCAGAGTATGTGAAGCAGGCGGTTCATGAGGATGATGCTGGAAACTATAAGAAGGCATTTACTCTTTATATGAATGCACTGGAATACCTAAAGACCCATTTGAAGTATGAGAGGAACCCTAGGATCAAGGAAATAATAAACGAGAAATTTCTTCAATATTTGAAGAGGGCAGAGGAGATACGTGCCATTCTTGATAAAGGAGAAAGTGGGCCTAAGCCTAACTTGTCTGGTGGTGCAGCTAAATCTGACGTTGTGAGACCAAATACAAAGCCGAAGAGTGGAGAAGCTAGAGATAAGGATGATCCAGAGAAAGCAAAGCTGATGGCTGGTCTTGATTCCGTAATAATGAGAGAGAAACCAAATGTCAAATGGAATGATGTTGCTGGGCTTGAGAATGCCAAACAAGCATTAAACGAGGCTGTGGTAATGCCTGTTAGGTACCCTCAATTTTTTACGGGGAAGAGACAACCATGGAGAGCATTTCTATTGTATGGTCCCCCTGGAACAGGGAAGTCATATTTAGCAAAGGCTGTAGCTACAGAGGTAGACTCAACATTCTTCAGTGTTTCATCATCAGATCTAGTTTCTAAATGGATGGGTGAAAGTGAAAAGCTGGTTTCCAGTCTTTTCCAAATGGCCCGTGAGAGTGCTCCTTCAATTATTTTTATTGATGAAATAGATTCTTTATGTGGCCAACGAGGTGAAGGCAATGAAAGTGAAGCATCTAGACGCATAAAAACTGAACTTCTTGTACAAATGCAGGGTGTGGGTAAAGAAGATCACAACGTTCTCATTCTTGCAGCCACCAATACTCCTTATGCTCTGGATCAGGCCATCCGGCGGCGATTTGACAAGCGAATATACATACCTCTCCCAGACATGAAGGCCAGGCAGCATATGTTTAAGGTGCATCTCGGAGATACCCCACACAACTTAACTGAAAAAGATTTTGAGGAATTGGCTCGCAAAACTGATGGATTATCTGGTTCAGACATTTCTGTTTGCGTTAAGGATGTACTTTTTGAACCAGTTCGTAAAACCAGAGATTCCAAATTCTTTAGGAAAACCTCTAAGGGAATGTGGATCCCTTGTGAGCCAACTGAAAAAGGAGCGGTTAACATTAGCCTGCAAGAACTTGATGCGCAAGGCCTTTCTTTAGAGATTATGCCGCCACCGATAACAAAAGAAGATTTTGTTAAAGTATTAAGAAGGCAGAAGCCAACAGTAAGTAAAGCAGATCTCGAGGTGCATGAGAGATTTACCCAGGAGTTCGGAGAGGAGGGTTGA 1314 0.4231 MYCDFLEHAAEYVKQAVHEDDAGNYKKAFTLYMNALEYLKTHLKYERNPRIKEIINEKFLQYLKRAEEIRAILDKGESGPKPNLSGGAAKSDVVRPNTKPKSGEARDKDDPEKAKLMAGLDSVIMREKPNVKWNDVAGLENAKQALNEAVVMPVRYPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEVDSTFFSVSSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGKEDHNVLILAATNTPYALDQAIRRRFDKRIYIPLPDMKARQHMFKVHLGDTPHNLTEKDFEELARKTDGLSGSDISVCVKDVLFEPVRKTRDSKFFRKTSKGMWIPCEPTEKGAVNISLQELDAQGLSLEIMPPPITKEDFVKVLRRQKPTVSKADLEVHERFTQEFGEEG 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g3640 437 FunFam Vacuolar protein sorting-associated protein 4 129 309 - -
Alju01g3640 437 SMART AAA_5 166 302 IPR003593 GO:0016887
Alju01g3640 437 FunFam vacuolar protein sorting-associated protein 4A 302 417 - -
Alju01g3640 437 Pfam MIT (microtubule interacting and transport) domain 6 70 IPR007330 -
Alju01g3640 437 FunFam Suppressor of K+ transport growth defect 1 6 75 - -
Alju01g3640 437 Pfam ATPase family associated with various cellular activities (AAA) 171 300 IPR003959 GO:0005524|GO:0016887
Alju01g3640 437 ProSitePatterns AAA-protein family signature. 272 291 IPR003960 GO:0005524|GO:0016887
Alju01g3640 437 Gene3D - 5 75 - -
Alju01g3640 437 Gene3D - 302 417 - -
Alju01g3640 437 Gene3D - 129 425 IPR027417 -
Alju01g3640 437 PANTHER AAA DOMAIN-CONTAINING 23 435 - -
Alju01g3640 437 MobiDBLite consensus disorder prediction 97 112 - -
Alju01g3640 437 Pfam Vps4 C terminal oligomerisation domain 370 434 IPR015415 -
Alju01g3640 437 SMART smart 2 80 IPR007330 -
Alju01g3640 437 MobiDBLite consensus disorder prediction 74 112 - -
Alju01g3640 437 SUPERFAMILY MIT domain 3 92 IPR036181 -
Alju01g3640 437 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 433 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g3640 Alju-ChrAlju01 65668176 65672047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g3640 165 358 Calmodulin-binding Proteins AT3G56690 35.714 2.57e-34 134