Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g3615 ATGATATCGTCTGGTGTTAACTTGGTGATGACTGTGATTGGATTTGCGGTGAGCACTATGTTCATCGTTTTCGTTTGCACTAGACTCATCTGTGCTCGAATTCAATTAAATGCTTCTCGCCGATCCCTCCTTGTTGCTTCCAGATCCAATCTCAGTATGCTGGAGCGGGGATCTCTTGGTCTTGAACCCAAAGCGGTAGCGAACTTTCCGACGAAGAAGTACAGTGATGGATGCTTTACTGCTGCCGAAAATTCTCAATGCACAGTTTGTCTTTCAGAATACCAAGGTGAGGATGTATTGCGCATCCTCCCGTATTGCGGACACTTCTTCCATGCAACCTGCATAGACCTATGGCTGCAGCAACAGTCGACATGCCCGGTTTGTCGAATCTCATTAAGCAAATCATCATCGGAGAGAAAACATATAATGCGGCCAATGTTCAGTGCCATTGTTCAATCTAATTTCGGCATGGAATCTACTGATCACTGCATGATGATGGCTAATAATGAGATATCATCAAGAAACCCTGACATACAAGAGGATCATTATGCCGCAGCTGAAGGTTGCGGAACGGTTGCTTTAGAGAATGTCACCAATGTAAGTGATGCTGATCAGTCCATGAAAGATGCAGGAAAGAAGCATTTAGAGAGCCCATCAATCACCCCATTGAGCTAA 675 0.4474 MISSGVNLVMTVIGFAVSTMFIVFVCTRLICARIQLNASRRSLLVASRSNLSMLERGSLGLEPKAVANFPTKKYSDGCFTAAENSQCTVCLSEYQGEDVLRILPYCGHFFHATCIDLWLQQQSTCPVCRISLSKSSSERKHIMRPMFSAIVQSNFGMESTDHCMMMANNEISSRNPDIQEDHYAAAEGCGTVALENVTNVSDADQSMKDAGKKHLESPSITPLS 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g3615 224 PANTHER OS11G0150450 PROTEIN 1 182 - -
Alju01g3615 224 FunFam E3 ubiquitin-protein ligase ATL6 49 135 - -
Alju01g3615 224 CDD RING-H2_EL5-like 86 129 - -
Alju01g3615 224 SMART ring_2 87 128 IPR001841 -
Alju01g3615 224 SUPERFAMILY RING/U-box 81 135 - -
Alju01g3615 224 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Alju01g3615 224 MobiDBLite consensus disorder prediction 203 224 - -
Alju01g3615 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 135 IPR013083 -
Alju01g3615 224 Pfam Ring finger domain 86 129 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g3615 Alju-ChrAlju01 65386129 65388103 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g3615 13 187 C3H Transcription Factor Family AT4G10150 33.889 2.26e-22 89.7