Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g3572 ATGGAAGGTGATTCTGCGACTTCTCTCGCCCCTGGATTCCGATTCCACCCCACCGACGAAGAACTCGTTCGCTACTACCTTAGGCGCAAGGTTTGTGGCAAACCCTTCCGGTTCGATCCAATTGCCGTCATCGACATCTATAAATCCGAACCCTGGGACCTCCCCTGTCAGTCGAAGCTGAAAAGTAGGGACTTGGAATGGTACTTCTTCACTGGGCTGGACAAGAAATACGGGAATGGGTCCAAAACAAATCGAGCTACGGAGAAAGGGTACTGGAAGACTACGGGGAAGGATCGCCCTGTGCGATACAACTCGCGAACTGTCGGAATGAAGAAGACCCTTGTTTATCATAATGGTCGAGCGCCGCGCGGTGCTCGTACCAATTGGGTGATGCATGAGTACAGAATGATCGATGATGAATTGGTGAAAGCAGGAATAGCTCAGGATGCTTTTGTGCTCTGTAGGGTTTTCCAGAAGAGTGGTACTGGGCCAAAGAATGGAGAGCAGTACGGTGCTCCCTTTATAGAGGAGGAATGGGAAGAGGATGAGGTGGCTCCAGTGTCAGGTGAAGGGGCTATTACTGATGAAGTTTTAATGGGTGATGATGCAGGTGCTTTTCTTGAAACAAACGACCTTGAGCAGCACCTTGATACGGACATAGCATCTGCTAGTGCTGCTCTTCCTCTCCGCATGTGTTATGGGGAGAGTAGCAGCTATCCTGAACCTGAACATCCTCGGGAAACCACTGAAGAAGAGAAACCTTTGGTAAACACTAGTGGAACTTGTGAGCCTCAAGAGGATCGGTTCCTGAATATGCCTGAGCAGTGTGCCGTGGATGGTAAAACATTGAAGGATGAATATGAAGCAGAAGCAAGACATGATGGAAGTCCTCTTAACGTCGATCATGCATTTGATGATCTATGCTTGGATGCTATTGATTTTCCTCAGATTGGTGATGGTTCATTCCTGGAAACCAATGATCTTTTAAATCCAATTGAGGCAGATCTTGATGTTAAGGACATGCTGGATGAGTATCTTAACTACTTTGATACCGATGATGATATTTCCAAGTTTTTATCTTTTGAGGATCCTCAAATTAAGAGCGATGTAGAATCAGTTCCTGACCAAGGACTGCCTTTCGTTCAGAATGTGGACGAGGAACCCAACATGGCTTGTAAGCAGAATTTTGATGAAGCACCTTGTAGTGACGGAGCTTCCTCTTCTAAGCAGAATCCAGAATTGTCAAAATCAGTATCAGGAGATATGAATACATTCACAAAAAGGGTCAGTCGCTTGTTGGATGGCATCCCTGCTCCTCCTGCCTTTGCTTCAGAGTTTCCTCCCAAAGACATTGCTCTTCGGCTTCATTCTGCTGCTCAATCTCCCAATCATGTAACTGCAGGTATGATTAGAGTGACTAACATTACTCTTAGAGGTAACGGGATGGACTGGACGCTGGGCAAGAATGGAGGGTTCAACTTTGTGATCTCTTCTGACTTTTCTCAACCTAATAATATTTCTGATGCGTTGGTCCCGGTTTCTGGCTTGCTGTCTGGCAAGAGTGCCTTTTTGGTGTCACATTGCTGGTTTTTCTTGATGCTCTTTTCGGTTCTTATTCTTTCACTGAGTTGCAAGATTGGGAGTTGCATGTATGCTGCTGGTAAATGA 1668 0.4604 MEGDSATSLAPGFRFHPTDEELVRYYLRRKVCGKPFRFDPIAVIDIYKSEPWDLPCQSKLKSRDLEWYFFTGLDKKYGNGSKTNRATEKGYWKTTGKDRPVRYNSRTVGMKKTLVYHNGRAPRGARTNWVMHEYRMIDDELVKAGIAQDAFVLCRVFQKSGTGPKNGEQYGAPFIEEEWEEDEVAPVSGEGAITDEVLMGDDAGAFLETNDLEQHLDTDIASASAALPLRMCYGESSSYPEPEHPRETTEEEKPLVNTSGTCEPQEDRFLNMPEQCAVDGKTLKDEYEAEARHDGSPLNVDHAFDDLCLDAIDFPQIGDGSFLETNDLLNPIEADLDVKDMLDEYLNYFDTDDDISKFLSFEDPQIKSDVESVPDQGLPFVQNVDEEPNMACKQNFDEAPCSDGASSSKQNPELSKSVSGDMNTFTKRVSRLLDGIPAPPAFASEFPPKDIALRLHSAAQSPNHVTAGMIRVTNITLRGNGMDWTLGKNGGFNFVISSDFSQPNNISDALVPVSGLLSGKSAFLVSHCWFFLMLFSVLILSLSCKIGSCMYAAGK 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g3572 555 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 236 - -
Alju01g3572 555 ProSiteProfiles NAC domain profile. 9 159 IPR003441 GO:0003677|GO:0006355
Alju01g3572 555 Gene3D NAC domain 18 162 IPR036093 GO:0003677|GO:0006355
Alju01g3572 555 MobiDBLite consensus disorder prediction 394 420 - -
Alju01g3572 555 FunFam Nac domain-containing protein 86 18 162 - -
Alju01g3572 555 Pfam No apical meristem (NAM) protein 11 136 IPR003441 GO:0003677|GO:0006355
Alju01g3572 555 SUPERFAMILY NAC domain 6 159 IPR036093 GO:0003677|GO:0006355
Alju01g3572 555 MobiDBLite consensus disorder prediction 400 420 - -
Alju01g3572 555 MobiDBLite consensus disorder prediction 235 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g3572 Alju-ChrAlju01 64826908 64830267 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g3572 5 552 NAC Transcription Factor Family AT5G04410 43.952 8.71e-145 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Alju01g3572 NAM 6.4e-36 No_clan