Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g3568 ATGGAAGCACCAGAAGAAGTCATCTCTTTGGGGGCTAAAGACCAAACCCATCAGATTGTCAAGGGCAAAAGAACCAAAAGGGTAAGGCCACAATCTCCATTACCCCTCTCCGCCACCGCCACCGTCGCCAAAACCGAAGAGTTATATCAATTTCTAGGTGAAGATAATAATACCAAATACTCTGCCAACACCACAACAACTTCTTCTGCAGAATTTGAAGAAAATAGCAACATTAATAATTACATCAGCAGCACAGAGGAAGAGGAAGACATGGCCAATTGCTTGATTCTTCTGGCTCAAGGCCAATCTCGGTTTTCTCCGAAAGCCGCCCAGGAAGAAGGTAACATGATGATCATAACAATGAAGTCTAACAACAACAACGATTATAACAATAACAGCAACAGCATCAGGAGATTCATGGAAGCATCCACCATGGGAGCTAACAAAGCAGGTTTCCATGTCTATGAATGTAAGACCTGCAATAAAACCTTTCCTTCTTTCCAAGCTTTAGGAGGCCACAGAGCAAGCCATAAGAAGCTCAAGAACTTACCTCCAATTTCTGCCATTTTAGACAAAGAGAAGAAAAAAGATCAAGATTTTATCATCCGAAGTCCTACCCCACTTTCTTTTCAGTTTCTGAACAGTGGCAGCAATCTTAACAACAAGAATAAGGTTCATGAGTGTTCTATTTGTGGGGCTGAGTTTGCTTCAGGTCAGGCTTTAGGTGGTCACATGAGAAGGCACAGAGCACCCATTGGAACAACCGCCACAACGGCGAACAATGCGACATTATTGGCACTTAACAATAATAACAATCGAGTGGGTTTGGGTTTGGGTTTGGAAGCTGATCAATATGACAATGAAGATCATCATCATCACCCCAGAAAGAAAAGGAACATTTTGTCTTTGGATTTAGATCTTAATCTTCCTGCCCCAGAAGATGATTATCAGAGTGAGTCACTATCGTTTGCCTTTGAACCCAAGAAGCAACAGCAGCAACAAGCAAGTCTGGTCTTTTCTTCTGCACGTGCTTTGGTGGATTGTCATTACTGA 1053 0.4245 MEAPEEVISLGAKDQTHQIVKGKRTKRVRPQSPLPLSATATVAKTEELYQFLGEDNNTKYSANTTTTSSAEFEENSNINNYISSTEEEEDMANCLILLAQGQSRFSPKAAQEEGNMMIITMKSNNNNDYNNNSNSIRRFMEASTMGANKAGFHVYECKTCNKTFPSFQALGGHRASHKKLKNLPPISAILDKEKKKDQDFIIRSPTPLSFQFLNSGSNLNNKNKVHECSICGAEFASGQALGGHMRRHRAPIGTTATTANNATLLALNNNNNRVGLGLGLEADQYDNEDHHHHPRKKRNILSLDLDLNLPAPEDDYQSESLSFAFEPKKQQQQQASLVFSSARALVDCHY 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g3568 350 ProSiteProfiles Zinc finger C2H2 type domain profile. 226 248 IPR013087 -
Alju01g3568 350 ProSitePatterns Zinc finger C2H2 type domain signature. 157 177 IPR013087 -
Alju01g3568 350 ProSiteProfiles Zinc finger C2H2 type domain profile. 155 182 IPR013087 -
Alju01g3568 350 SMART c2h2final6 155 177 IPR013087 -
Alju01g3568 350 SMART c2h2final6 226 248 IPR013087 -
Alju01g3568 350 ProSitePatterns Zinc finger C2H2 type domain signature. 228 248 IPR013087 -
Alju01g3568 350 Pfam C2H2-type zinc finger 154 179 - -
Alju01g3568 350 Pfam C2H2-type zinc finger 225 251 - -
Alju01g3568 350 SUPERFAMILY beta-beta-alpha zinc fingers 154 248 IPR036236 -
Alju01g3568 350 Gene3D Classic Zinc Finger 152 248 - -
Alju01g3568 350 PANTHER ZINC FINGER PROTEIN ZAT5 74 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g3568 Alju-ChrAlju01 64761720 64762772 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g3568 1 350 C2H2 Transcription Factor Family AT5G04390 43.158 3.17e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju01g3568 zf-C2H2_6 9.6e-13 CL0361