Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g3563 ATGCTTCCTCCTATTACCTGCATTCTCTTCTTATGTATCTTCTTGTGTTTTTTCTTTTCTTCCATTAAAGCTTCCTTCAACCTTTCCTTGCCCCACCAGCAGCCTTACCCTGAAGCTGTGGTTCATGAAGTTCACAGGAGAGTCAATTTATCTCTTTCCCGGCGGGAACTACTCGCCGGCTCCGGAAAGGACCTCAGCAATGGCTGTCTCACCGGAAATCCAGTGGACGACTGCTGGCGGTGCGACCCTAACTGGGCGGCGAACCGGCAGAAGCTAGCGGACTGCGGCATTGGGTTCGGCCGCGACGCTATGGGTGGAAAAGGCGGCCGGATCTACGTCGTCACAGACTCATCCGACTCCAACCCGGCGAATCCAACTCCGGGAACTCTCCGTTTCGGAGTGATCCAAGACGAACCCCTCTGGATCATCTTCTCCAGCAGCATGACCATAACCCTAAAACACGAACTCATCTTCAACAGCTTCAAAACCGTCGACGGCCGCGGCGCCAATGTCCACATCACCGGCCACGGCTGCCTGACACTCCAGTACGTTTCCAACATCATCATCCACAACGTCCACATCCACCACTGTAAGCCCTCCGGTAACACCAACATCCGCTCAAGCCCAACACACGTCGGTTTCAGAGGCAAATCGGACGGCGACGGAATCTCAATTTTCTCATCCCGTAAGATCTGGATCGACCATTGCTCACTATCGTACTGCACAGACGGGCTAGTCGATGCGATAATGGGATCGACGGGGATAACGATATCGAACAGCCATTTTGCGCACCACGACGAAGTGATGCTTCTAGGGCACAACGATGGGTACTTGCCGGACCGGGGAATGCAGGTGACAATAGCGTTTAACCATTTCGGAGAAGGATTGGTTCAGAGAATGCCAAGATGTAGATTAGGGTATATCCATGTGGTGAACAATGATTTTACGCAGTGGGAGATGTATGCTATCGGCGGCAGCGCGAACCCTACTATCAATAGCCAGGGTAACCGTTACACTGCGCCGCCTCGTCCTGATGCTAAAGAGGTGACGAAGCGGGTGGACACAGACGAGGGGGAGTGGGCGGATTGGAACTGGAGGACGGAGGGTGATGTCATGGTCAACGGCGCCTTCTTCGTGCCGTCCGGTGGCGGCCTCAACGCTCAGTACGCCAGAGCCACCAGCGTCGACCCCAAGTCCGCCGTCCAGATCGACCAGCTCACCCTCAACGCCGGCGTCTTCGGCGATCCCAGGGATAATGGAGATCTGTTTCCCGGGTTCAGCGGCGGTGGGTCCGTGACCGGAGCCACCAGCACCGGCAACGTGGGGTCCAGCAGCGGAGGCGACGATGGTGACTTCTTTGGAATGATATTCAGGGGTAGTAGCAGCGAAGCAGCACCACCCTCACTCTCCATTGTTTCAATCCTTTTGTCTTTTCTCATTATTTGCATTTTGTACACTTTCACCAACCACCATGCCCACTTGATTATATATGAATTCATATGA 1503 0.5422 MLPPITCILFLCIFLCFFFSSIKASFNLSLPHQQPYPEAVVHEVHRRVNLSLSRRELLAGSGKDLSNGCLTGNPVDDCWRCDPNWAANRQKLADCGIGFGRDAMGGKGGRIYVVTDSSDSNPANPTPGTLRFGVIQDEPLWIIFSSSMTITLKHELIFNSFKTVDGRGANVHITGHGCLTLQYVSNIIIHNVHIHHCKPSGNTNIRSSPTHVGFRGKSDGDGISIFSSRKIWIDHCSLSYCTDGLVDAIMGSTGITISNSHFAHHDEVMLLGHNDGYLPDRGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSANPTINSQGNRYTAPPRPDAKEVTKRVDTDEGEWADWNWRTEGDVMVNGAFFVPSGGGLNAQYARATSVDPKSAVQIDQLTLNAGVFGDPRDNGDLFPGFSGGGSVTGATSTGNVGSSSGGDDGDFFGMIFRGSSSEAAPPSLSIVSILLSFLIICILYTFTNHHAHLIIYEFI 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g3563 500 Gene3D - 72 414 IPR012334 -
Alju01g3563 500 PANTHER PECTATE LYASE 18-RELATED 33 413 IPR045032 GO:0030570
Alju01g3563 500 PRINTS Pollen allergen Amb family signature 119 144 IPR018082 -
Alju01g3563 500 PRINTS Pollen allergen Amb family signature 219 240 IPR018082 -
Alju01g3563 500 PRINTS Pollen allergen Amb family signature 299 318 IPR018082 -
Alju01g3563 500 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Alju01g3563 500 PRINTS Pollen allergen Amb family signature 392 415 IPR018082 -
Alju01g3563 500 PRINTS Pollen allergen Amb family signature 363 387 IPR018082 -
Alju01g3563 500 PRINTS Pollen allergen Amb family signature 95 112 IPR018082 -
Alju01g3563 500 PRINTS Pollen allergen Amb family signature 155 171 IPR018082 -
Alju01g3563 500 MobiDBLite consensus disorder prediction 332 355 - -
Alju01g3563 500 SMART amb_all 147 344 IPR002022 -
Alju01g3563 500 FunFam Pectate lyase 72 414 - -
Alju01g3563 500 Pfam Pectate lyase 155 336 IPR002022 -
Alju01g3563 500 SUPERFAMILY Pectin lyase-like 69 390 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g3563 Alju-ChrAlju01 64658824 64663945 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g3563 21 419 Polysaccharide Lyase AT3G54920 68.215 0.0 580