Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g3508 ATGTTTCTGGTCATGGATGAGAGGGTTTCATCAGAAAAGTGCTTAGATTCTCAATTATGGCACGCCTGTGCTGGTGCGATGGTTCAAATGCCACCCATGAATTCCAAGGTCTTCTACTTCCCTCAGGGCCACGCAGAGCACGCTCATCAGGGGAAGGTAGATTTCGGTGGGTCGACCCGAATTCCTTCTTTAATTCCTTGCAGGGTTTCTGGTATGAAATACATGGCAGACCCTGACACAGATGAGGTGTTTGTGAAAATGCGTCTGACACCTCTGAGAGATAACGAGATGGGTTTTGAAGATGATAATTTTCTGGGGAACCATCGAGTTGAAAATCAAGAGAAGCCAGCTTCTTTTGCAAAGACATTGACTCAATCTGATGCCAATAACGGTGGAGGCTTCTCTGTTCCTCGTTACTGTGCAGAGACCATCTTTCCTAGGTTAGATTATTCTGCTGAACCACCAGTTCAGACAATTATTGCGAAAGATGTGCATGGACAGAACTGGAAGTTTAGGCATATCTATAGAGGGACTCCTCGCCGGCACCTTTTAACAACTGGATGGAGCAATTTTGTGAACCAGAAGAGGCTTGTTGCTGGGGATTCAATTGTGTTCTTGAGGGCTGAAAATGGAGATCTTTGTGTTGGAATAAGGAGGGCAAAGAAGGAGATTGGTGGTGGAATTGAGTACCCAACTATTTGGAATCAGGCAGTCCCACCACTATTTGGTGGTGCGAATTTGGGTTTCATGCGTGAAGATGAAAACTCATTGTTGAGGAGAAAACCTCATGAGGAGATGAAGGGAAGAGTGACAGCTGAATCTGTTATTGAAGCTGTAAATTCTGCTGTTAATGGCAGGCCCTTCGAGGTCGTGTACTATCCCCGAGCTAGCACGCCGGAGTTCTGCGTTAAGGCCTCGTCGGTGAGGGCTGCAATGCAAATTCAGTGGTGTTCTGGGATGAGATTCAAAATGCCTTTTGAAACTGAGGATTCCTCCAGAATCAGCTGGTTCATGGGGACAATATCTTCTGTTCAGGTTGTTGATCCCATTCGCTGGCCTGATTCTCCATGGCGCCTTCTACAGGTAGCATGGGATGAACCTGATTTGCTTCAGAATGTTAAGAGTGTGAACCCTTGGTTGGTTGAACTAGTTTCAAATATGCCAACCTTCCATCTGTCTCCATTCTCGCCGCCGAGAAAGAAATCACGATTTCTACAGCATCCGGAATTTCCTCTCCTCAATCAGCTTCCTATGCCACCGTTCTCTGGAAATCTCCTCAATCAAACTACTAACTCCCCTTGTAACGTTCATGACAGTTATAGTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATATGGTCTCTCTCCGTGTGATTTCCCCTTCAACAAGCTGCAGTCCGATATTCTTCTCGGAAAACTTCCAAGGCTCGAACACGCTGTCCAGCCTCCTCCTAGACCTCCTCCTCGTAGCTCCTACAATAGCAGCAGCCTGAAGAACAATGCCGAAATATCATGCTTGTTGACCATGGGAAATCCCAGCCTGAGCTTGAAGGAACCGGTCGATGCCAAAACACCCCATATCTTCTTGTTTGGTCAGCGCATTCACACCGAACAGCAGAGTTCAAACAGTAGCTCTGCTAGCACAACCGGGAATAGTTCATCCGAAGGGACTTCCCAAAAGGCATCCAATGTTGTTTCTGACGGCTCGGGCTCTTCTGCTTTGCACCGAAACAGTCCAACCGAGAATTCTTCTGAAGGAGGGTCTCCCTGGTACAAAGATCAGCACAATTCTGATATCGGAACCGAAAATGTTAACCTCTTGTGCTTGGCTTTATAA 1839 0.4698 MFLVMDERVSSEKCLDSQLWHACAGAMVQMPPMNSKVFYFPQGHAEHAHQGKVDFGGSTRIPSLIPCRVSGMKYMADPDTDEVFVKMRLTPLRDNEMGFEDDNFLGNHRVENQEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDVHGQNWKFRHIYRGTPRRHLLTTGWSNFVNQKRLVAGDSIVFLRAENGDLCVGIRRAKKEIGGGIEYPTIWNQAVPPLFGGANLGFMREDENSLLRRKPHEEMKGRVTAESVIEAVNSAVNGRPFEVVYYPRASTPEFCVKASSVRAAMQIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVVDPIRWPDSPWRLLQVAWDEPDLLQNVKSVNPWLVELVSNMPTFHLSPFSPPRKKSRFLQHPEFPLLNQLPMPPFSGNLLNQTTNSPCNVHDSYSPAGIQGARHAQYGLSPCDFPFNKLQSDILLGKLPRLEHAVQPPPRPPPRSSYNSSSLKNNAEISCLLTMGNPSLSLKEPVDAKTPHIFLFGQRIHTEQQSSNSSSASTTGNSSSEGTSQKASNVVSDGSGSSALHRNSPTENSSEGGSPWYKDQHNSDIGTENVNLLCLAL 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g3508 612 SUPERFAMILY DNA-binding pseudobarrel domain 108 221 IPR015300 -
Alju01g3508 612 ProSiteProfiles B3 DNA-binding domain profile. 119 221 IPR003340 GO:0003677
Alju01g3508 612 MobiDBLite consensus disorder prediction 537 597 - -
Alju01g3508 612 FunFam Auxin response factor 117 221 - -
Alju01g3508 612 Gene3D - 117 221 IPR015300 -
Alju01g3508 612 FunFam Auxin response factor 316 389 - -
Alju01g3508 612 Pfam Auxin response factor 278 361 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Alju01g3508 612 Pfam B3 DNA binding domain 119 220 IPR003340 GO:0003677
Alju01g3508 612 CDD B3_DNA 118 219 IPR003340 GO:0003677
Alju01g3508 612 SMART B3_2 119 221 IPR003340 GO:0003677
Alju01g3508 612 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 568 IPR044835 GO:0003677|GO:0006355|GO:0009725
Alju01g3508 612 Gene3D - 315 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g3508 Alju-ChrAlju01 63770089 63772305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g3508 11 598 B3 DNA Binding Superfamily AT4G30080 57.358 0.0 611
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Alju01g3508 B3 4.5e-22 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g3508 01 63770089 63772305 Alju01g3508 01 63770089 63772305 ECH