LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju01g3457	ATGGCTGAACCAATTTCATCCTCGGATCTGACTTTCAATGATTTATCATCCGAGTTTGATAACCTCCCTGTTCCATCCATGGATCCACTCTTTTTCTCCGGCGACGACCATGCCCTGCCCTCTGAAGCATTCGCATCAGATCTTGACTTAGCCATGGAGTTCGGAAATGATGGAGAATTTGAGATTTCCTTTGATGATCTTACCGATCTTCATATTCCTGATGAAACCGATGATTTCCTACTCCCCGATGGCTACGGTCAACCAACTGGATCACATGAGTTGAATGACCATGATAAGCAGTTGAGCTACTACAGTTCCAATTCTGGGTCACCTGAACCGGATAATTGTTCAGGTTCGCGGAATCGGAATCCTGATGTTGCAGAGTTTTTGAATACACAATCACCTGAGTCTGGTAGTTGCGAGCATTCTGTGACACATTCTTTGGATAATTCAGGTGATCGGAACTCGCATCATTCACTGCATGTCAAGGCTTCGAGATTTAAATCACCAGATTCTGATTCTTGCGACCGGGAATCTTCTGGTGGATCCATTTCATCACAGGGTTCAGGCAACGGTGGTTTAGGTGACTCGCGTGCTTCTGAAGTGAGGAATAAGTCTTCACCGGATTCTCACTGCGATGACAGAGACATTTCTTCTCATCGGATTACTGATCAGAATATAAAATTGGAGGACATGGGTAAAAATTGTGATTTGAAAAGGAAGAAGCAACAGAATGAAGGAAATACTGAGTCCAGAACTACCAAGTACCGAAAGTCGTCGGTGCCTACAGTGGATACCGCTCAACAGCCTGGTTTCGATGCCGGGGATGAAGAGGACGAGAAAAGGAAGGCTAGGCTGATGAGGAATCGAGAAAGTGCCCAGCTCTCCAGACACAGAAAGAAGCACTATGTGGAGGAGCTTGAGGAGAAGGTGAGGTCAATGCATTCAACCATAACTGGTTTAAGCGGTAAGGTATCGTTTGTTATGGCCGAGAATGCTGCTTTGAGACAGCAATTGAATGCTGGTGGAATGTGCCCGCCACCACCAGCTCCAGGGATGCACCTTCATCCTCCAATGGCACCCATGACCTATCCATGGGTGCCGTATGCACCCTATCTTGTCAAACCGCAAGGTTCTCAGGTTCCTCTGGTTCCAATCCCCAGATTAAAGTCTCAACAATCACAATCTGCTCCAAAGGCAAAAAAGTCCGATAATAAAAAGACTGAGGGAAAAACTAAGAAAGTTGCCAGCATTAGTTTGTTAGGTTTGCTTTTCTTTTTATTTCTTTTTGGTGGACTCGTTCCTCTTGTTAATGTTAGGTTTGGAGATATGGGGGACAATGTTCCTCGGAGGTCCATTTCTGCTAATGATAGGTTCTATAGTCAGCACCAAGGAAAAGCTTGGGAGGTTAGTGGTCATATAAATAAATCTGAAGGAGAAAAGGGAGTAAGATTCTCTAGCGGGAATTTGGGTATTTCTGATAGTGTGTTATATGAGAAAGGTCGCAAACTAGAAGAAACACTGAGACAGCAGGACTCACCATATAGAATGAACTCAGATGACTTTGTTCATAGGGGAAATGCTAGTGAGCCCGAGCCTCTTCTTGCTTCTCTGTATGTTCCAAGGAATGATAAGCTTGTGAAAATTGATGGTAACTTGATAATTCACTCTGTTCTGGCTACGGAGAAAGCCATGGCATCTGATACTACTCATACAGAAAAGAATGTGAGAGAAAATGGATTGGTGATTTCTAAAACTTGGGATTCTGCACTGGCTATTCCTGAAGTTGGAAGGAACAGGGATCAACATCCTCTCTCATATAGGAGCCCACCTGAACAGCGAAAGGCTCTTGCCTCTGGTTCTGCCGAAACATTGAAGAACCATTTAAAGTCAACTGCGACTGATGGTAAAATGCAACAATGGTTTCGTGAAGGTCTTGCTGGGCCAATGTTGAGTTCTGGGATGTGCACAGAGGTTTTCCAGTTTGATGCCTCACCGAAACCAGGAGCTATAGTTCCAGCATCATCATCAGTTGCAAATGTTTCCGCTGTTAATCGCCAGAATGATACAAGCATCAACAAGAGAAGGAATAGAAGGTTCCTTCACAAGCTACCACATTCCTTTACCAGATCTTCTGGTCTCAACGCAAGCGAAGAACATGTTATGAGAAAATCCAAGAATGAGAACCTCCATGGTAACAAATCAGCATCTTCCATGGTGGTTTCGGTTCTTGTTGATCCCAAGGAGGTCGGAGACGGCGATGTGGATGGTGTGATGAAGCCTAAATCACTTCCTCAGATTTTTGTGGTTGTGCTCATAGATAGTGTCAAGTATGTCACTTACTCGTGTGGCCTTCCACGAGCATCTCACCATCTTGTGACTGCCTGA	2388	0.446	MAEPISSSDLTFNDLSSEFDNLPVPSMDPLFFSGDDHALPSEAFASDLDLAMEFGNDGEFEISFDDLTDLHIPDETDDFLLPDGYGQPTGSHELNDHDKQLSYYSSNSGSPEPDNCSGSRNRNPDVAEFLNTQSPESGSCEHSVTHSLDNSGDRNSHHSLHVKASRFKSPDSDSCDRESSGGSISSQGSGNGGLGDSRASEVRNKSSPDSHCDDRDISSHRITDQNIKLEDMGKNCDLKRKKQQNEGNTESRTTKYRKSSVPTVDTAQQPGFDAGDEEDEKRKARLMRNRESAQLSRHRKKHYVEELEEKVRSMHSTITGLSGKVSFVMAENAALRQQLNAGGMCPPPPAPGMHLHPPMAPMTYPWVPYAPYLVKPQGSQVPLVPIPRLKSQQSQSAPKAKKSDNKKTEGKTKKVASISLLGLLFFLFLFGGLVPLVNVRFGDMGDNVPRRSISANDRFYSQHQGKAWEVSGHINKSEGEKGVRFSSGNLGISDSVLYEKGRKLEETLRQQDSPYRMNSDDFVHRGNASEPEPLLASLYVPRNDKLVKIDGNLIIHSVLATEKAMASDTTHTEKNVRENGLVISKTWDSALAIPEVGRNRDQHPLSYRSPPEQRKALASGSAETLKNHLKSTATDGKMQQWFREGLAGPMLSSGMCTEVFQFDASPKPGAIVPASSSVANVSAVNRQNDTSINKRRNRRFLHKLPHSFTRSSGLNASEEHVMRKSKNENLHGNKSASSMVVSVLVDPKEVGDGDVDGVMKPKSLPQIFVVVLIDSVKYVTYSCGLPRASHHLVTA	795

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju01g3457	795	MobiDBLite	consensus disorder prediction	202	253	-	-
	Alju01g3457	795	Gene3D	-	279	344	-	-
	Alju01g3457	795	MobiDBLite	consensus disorder prediction	598	623	-	-
	Alju01g3457	795	MobiDBLite	consensus disorder prediction	176	194	-	-
	Alju01g3457	795	MobiDBLite	consensus disorder prediction	388	411	-	-
	Alju01g3457	795	MobiDBLite	consensus disorder prediction	78	283	-	-
	Alju01g3457	795	MobiDBLite	consensus disorder prediction	147	175	-	-
	Alju01g3457	795	CDD	bZIP_HY5-like	282	333	-	-
	Alju01g3457	795	SUPERFAMILY	Leucine zipper domain	281	339	IPR046347	GO:0003700\|GO:0006355
	Alju01g3457	795	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	279	342	IPR004827	GO:0003700\|GO:0006355
	Alju01g3457	795	SMART	brlzneu	277	341	IPR004827	GO:0003700\|GO:0006355
	Alju01g3457	795	PANTHER	BASIC-LEUCINE ZIPPER TRANSCRIPTION FACTOR F-RELATED	56	792	-	-
	Alju01g3457	795	Pfam	bZIP transcription factor	278	339	IPR004827	GO:0003700\|GO:0006355
	Alju01g3457	795	MobiDBLite	consensus disorder prediction	100	146	-	-
	Alju01g3457	795	FunFam	bZIP transcription factor 49	280	342	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju01g3457	Alju-ChrAlju01	62976631	62980036	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju01g3457	184	794	bZIP Transcription Factor Family	AT2G40950	52.504	4.39e-153	462

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Alju01g3457		bZIP_1	3.5e-10	CL0018