Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g3452 ATGGAGTATTATCGTTCTTCCTCCCACTACCATCTTACTCTATATTACTTTGCTCTTCCATCTATTCAACACCAACAACTTTCTCACTCATCTCTATATCCTGAATCGGAGCAGCTGGTATCGCATCCTTCTTCTTCTTTTTGCTGCCGTAGACCAAGGCTTGAGTACAGCGAGCGCGCTTTTCTTTTCCAGAACGATCTCTCGTCGTCGGGATCTGGTGCGGTTCTTGAGGTTGGGGCTTCAACCCTTCAGGCTCCTTGGTGGTACATCTTCACAGCAGATCCATATACAGCCATGTCTGGAAACACAAGTTGCACTGTTTACATAGGCAATCTAGATGAGAGGGTCACGGAGAGGATCTTATATGATATATTAATTCAAGCAGGACGAGTGGTGGACCTGTATATTCCTAGAGATAAGGAATCTGAGAAACCTAAAGGATTCGCTTTTGCAGAATATGAAAGTGAGGAGATTGCGGATTATGCTATCAAGCTTTTCTCAGGCCTTGTGACACTCTACAAGAAAACACTGAAGTTTGCGAAATCTGGCCAAGACAAAGCTACTCCAAATGGTTCTGCAGTCGCTACACCGTCATCAAATTCTTCTAACCGATCAAGGCCCCATCCTGTGCCAATAAATACTTCTACAGAAATTTCTCCGCACTCTGCTAGGTTACCAACACCTAGCCGAATTTCAGATTACCCTGTAAATTACTCCCAAGTTACCCGCCGAGTAGTTGACCAATCTAGTGAGTATGGATCTCTCTACAATAACAACGATTATGAATACAGCCGGAGAGTTTTTGAGCCAACATTGGATAGCATTAGCCGGTATAGGTCACGCCATTATGATACAAATAACCCAATCTCTTTCCCACATTACTAA 885 0.4362 MEYYRSSSHYHLTLYYFALPSIQHQQLSHSSLYPESEQLVSHPSSSFCCRRPRLEYSERAFLFQNDLSSSGSGAVLEVGASTLQAPWWYIFTADPYTAMSGNTSCTVYIGNLDERVTERILYDILIQAGRVVDLYIPRDKESEKPKGFAFAEYESEEIADYAIKLFSGLVTLYKKTLKFAKSGQDKATPNGSAVATPSSNSSNRSRPHPVPINTSTEISPHSARLPTPSRISDYPVNYSQVTRRVVDQSSEYGSLYNNNDYEYSRRVFEPTLDSISRYRSRHYDTNNPISFPHY 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g3452 294 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 99 290 - -
Alju01g3452 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 176 IPR000504 GO:0003723
Alju01g3452 294 SUPERFAMILY RNA-binding domain, RBD 84 170 IPR035979 GO:0003676
Alju01g3452 294 CDD RRM1_SF3B4 107 181 IPR034158 -
Alju01g3452 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 184 IPR000504 GO:0003723
Alju01g3452 294 SMART rrm1_1 106 180 IPR000504 GO:0003723
Alju01g3452 294 MobiDBLite consensus disorder prediction 183 236 - -
Alju01g3452 294 Gene3D - 98 192 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g3452 Alju-ChrAlju01 62919591 62923037 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g3452 94 194 Eukaryotic Initiation Factors Gene Family AT1G71770 30.097 4.28e-06 46.2