Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g3444 ATGAATCTTCTTGTGTTTTTATTCTTCTGTGTGATGGCTTCATGCTATATGGCGGTGGCCAAGGTGGTGCTGATTGGGAACAACGTCACTCTATCCTTCGACGATATTGAAGCTAATTTTGCTCCGGCGATGAAAGGTTCTGGATTATGCGGGGTCTTGTATATAGCAGAGCCGGTTGACGCATGTACAGAACTGACAAATAAAGTTGAACCGCTTTCAAATACAAGTTCACCTTTTGTTTTGATAATTAGAGGGGGCTGTAGCTTTGAAGAGAAAGTCAGAAGAGCACAGAAGGCTGGCTTTAAAGCCGCAATTGTCTATGACAATGAAGACGATGGCATATTAGTTTCAATGGCAGGAAATTCAGGCGGCATGAAAATATATGCAGTATTTGTAACTAAAGCCTCAGGTGAAACACTGAAAAGATATGCTGGACTGACTAACATTGAAGTGTGGCTAATTCCAAGTTTTGAAAACTCAGCATGGTCTATCATGGCAATTTCATTCATTTCCCTACTAGCAATGTCAGCAGTTTTGGCTACTTGTTTCTTTGTCCGGAGGCATCGCATTCGGAGAGAAAGGCCTCAGTCTTCTCGTGTTCGTGAGTTTCATGGGATGAGTAGTCGCCTGGTGAAAGCAATGCCTAGTTTGACATTTACTGCTGTTTTAGAGGATAATTGCACATCAATGACATGTGCAATATGCCTTGAAGACTATTGTGTTGGAGAGAAGCTCAGGATTCTGCCGTGCTGTCACAAGTTTCATGCCGCTTGTGTGGATGCTTGGCTCACTTCATGGAGAACCTTTTGTCCAGTTTGTAAGCGTGATGCAAGGACTGGTCTACCTGATCCTCCACCTTCAGAATCCACGCCTTTGCTTTCATCTGGCGCAGCATCTGCAGCATCCTCTGTAGCGTCATCTCTGAGATCATCATTAGCATCATCTTCTGCAATACAAATTAGCCGGGCATCGTCACGGTCCCCATCTGTTTCTCGGGACCATTCTGTGGCTAGTACTCCCTACATTCAGCCATCATTTAGGTCCCTTCGCCAATCTCCTTTCATGAGTGTCAGTCAAAGCTCAGTAGATCTTAGGAATGCATCCCAAAGATCTCAAGCTTCTCAATTGAATTCTCCACATTCTATGGGTTACCCATCAATGTCATCAATGAACTCAAGGTACTTGTCTCCACATATTCGAAGCCCAAGCAATGTTTCAGCAAGTTATCTTGGTTCTTCTAGTCATCATCAACACCCACTTCATTATAGCGAGTCAGCTGCAAGTTTTTCTCCATTTGCTTCCGCCCAGTCCCTTCCAGAATGCTGA 1326 0.4412 MNLLVFLFFCVMASCYMAVAKVVLIGNNVTLSFDDIEANFAPAMKGSGLCGVLYIAEPVDACTELTNKVEPLSNTSSPFVLIIRGGCSFEEKVRRAQKAGFKAAIVYDNEDDGILVSMAGNSGGMKIYAVFVTKASGETLKRYAGLTNIEVWLIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPQSSRVREFHGMSSRLVKAMPSLTFTAVLEDNCTSMTCAICLEDYCVGEKLRILPCCHKFHAACVDAWLTSWRTFCPVCKRDARTGLPDPPPSESTPLLSSGAASAASSVASSLRSSLASSSAIQISRASSRSPSVSRDHSVASTPYIQPSFRSLRQSPFMSVSQSSVDLRNASQRSQASQLNSPHSMGYPSMSSMNSRYLSPHIRSPSNVSASYLGSSSHHQHPLHYSESAASFSPFASAQSLPEC 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g3444 441 ProSiteProfiles Zinc finger RING-type profile. 232 274 IPR001841 -
Alju01g3444 441 Gene3D - 20 153 - -
Alju01g3444 441 CDD PA_C_RZF_like 9 161 IPR044744 -
Alju01g3444 441 SUPERFAMILY PA domain 78 142 IPR046450 -
Alju01g3444 441 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 156 289 - -
Alju01g3444 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 279 IPR013083 -
Alju01g3444 441 Pfam PA domain 60 140 IPR003137 -
Alju01g3444 441 SMART ring_2 232 273 IPR001841 -
Alju01g3444 441 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 20 154 - -
Alju01g3444 441 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 192 279 - -
Alju01g3444 441 SUPERFAMILY RING/U-box 225 286 - -
Alju01g3444 441 MobiDBLite consensus disorder prediction 360 397 - -
Alju01g3444 441 Pfam Ring finger domain 231 274 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g3444 Alju-ChrAlju01 62860249 62867336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g3444 20 440 C3H Transcription Factor Family AT1G22670 48.148 7.09e-116 344