Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g3416 ATGAGAACAAACGTTGTTGAACAGAGAAAACAGAGAGGAAGGATCGTGGTAACACAAGCTGCTTATTTAAGCATTCAAGTTCAGTTTATTTGCCTTTTTTCTTTCTCATTCTTCATTTTGTCCTGGGTTCTTGTGTTAATCTGTTTCATCTATTCAGCTTTGGATTTGAATCCTGATCTGAAAGTGAGTTCATGTGCTAACGGCCGGACAACATCATCTTCCTTAATCTCCCCTCAGAATCATCAAATGCAAGCGAAAACTTCCCCTAATCCACCCTCTTTTCCAGATTTCAGTTTGCAGCATAGTGATCAACGGAGGTGGGAAGATCCCTCTATGTCAGAGGACGGTGTCCAGATGGAGACCCTGTTTAAAGAATTCAACCAAGCCTGTGGAACCCAGTCCTTGCTTCCGTGTGGTTCCAATGACGGGATCACAATCCCCAATCAAGAAAATTGTCAGATGGGCCACACGTCACGAGCCGGTGAACTTCAAGATTGGGATCCCTGCATAATGTTGGAAAATCTTTCTTTCCTGGAAGATAAGATTCATCAGCTCCGGGGCCTATTGCATTTGATTGTTGATAAGAAAGGTCAACAATTAGGACAACCCAACGAAATTATAACTCAAGAGAAGCAGCTTGTCACGGCTAATCTGACATCGATCATTGTGCAATTGATCTCTACAGCAGGAAGTCTTCTTCCTTCTGTAAGGCTTGCTGCATCAAACACCAGTCCATCTGTGGGACAGCATGGCCAGATTCCTGGGATTACTTTTCCGTCAGGATTAGGTCCGAGCAGTAGTAGTATCCAACCACAACATGATATCAGAGATAAAATATGTGATCAATCGAACCAGATTGATCTTACTAACATGTGTGAAATGGAGCAAAACCACATGGAAGAACATGAATTGAAAGATGAAGAGGATGTGGATGAGGGTGAGAACCTTCCACCGGGCTCCTTTGAGATTTTACAGCTAGAAAAAGAAGAAATCCTTGCTCCTCATACACACTTCTGTACAATATGTGGTAAGGGATTCAAGAGAGATGCAAATCTTCGGATGCATATGAGAGGCCATGGTGACGAGTACAAAACCCCGGAAGCCCTCGCAAAACCTAGCAAAGAATCCGTGTCTGAACCGAAGCTCATCAAGAGGTATTCCTGTCCCTACCCTGGCTGCAAGCGTAATAAGGATCACAAGAAGTTCCAAGCTCTGAAGACCATTCTGTGTGTGAAAAACCATTACAAAAGAAGTCACTGCGACAAGAGTTACATTTGCAGCCGGTGCCACACGAAGAAATTTTCGGTCCTAGCAGACCTTAAAACTCACGAAAAGCACTGTGGTAAGGATAAATGGCTTTGTTCATGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTTGGGCACATTGCTCTGTTTCAAGGCCATACACCAGCTATACCATTGGATGAATCAAAAGCACCAGCTGGGCAAGCTGATATGGAAATCAATGAGAACAACAACAATAATAATAATAAGGGAGGAAGCATTAACTTGAGCTTTGGATCAAATGCTTCTTGTGAAAATGGGATTCAAAACATGATGGATGTGAAAGGTATTAGTGATGGTCCTATCAGTTACCTCTCATCATTGAACTTTGAAACCTGTAACTTTGGCGAGTTCAATGATTTTCCTCGACCCCCATTTGAAGACGCTGCCAGAGGTTCGTTTCCTTTTCTCATGTCCGAATCCTTCAATTATTCTCCAAAACCTGGGGGAGAATCATGTCCTGACACTCTGTTGTGA 1785 0.4291 MRTNVVEQRKQRGRIVVTQAAYLSIQVQFICLFSFSFFILSWVLVLICFIYSALDLNPDLKVSSCANGRTTSSSLISPQNHQMQAKTSPNPPSFPDFSLQHSDQRRWEDPSMSEDGVQMETLFKEFNQACGTQSLLPCGSNDGITIPNQENCQMGHTSRAGELQDWDPCIMLENLSFLEDKIHQLRGLLHLIVDKKGQQLGQPNEIITQEKQLVTANLTSIIVQLISTAGSLLPSVRLAASNTSPSVGQHGQIPGITFPSGLGPSSSSIQPQHDIRDKICDQSNQIDLTNMCEMEQNHMEEHELKDEEDVDEGENLPPGSFEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPEALAKPSKESVSEPKLIKRYSCPYPGCKRNKDHKKFQALKTILCVKNHYKRSHCDKSYICSRCHTKKFSVLADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDESKAPAGQADMEINENNNNNNNKGGSINLSFGSNASCENGIQNMMDVKGISDGPISYLSSLNFETCNFGEFNDFPRPPFEDAARGSFPFLMSESFNYSPKPGGESCPDTLL 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g3416 594 ProSiteProfiles Zinc finger C2H2 type domain profile. 337 364 IPR013087 -
Alju01g3416 594 MobiDBLite consensus disorder prediction 72 100 - -
Alju01g3416 594 SUPERFAMILY beta-beta-alpha zinc fingers 336 361 IPR036236 -
Alju01g3416 594 MobiDBLite consensus disorder prediction 72 110 - -
Alju01g3416 594 Gene3D Classic Zinc Finger 320 390 - -
Alju01g3416 594 ProSitePatterns Zinc finger C2H2 type domain signature. 339 359 IPR013087 -
Alju01g3416 594 SMART c2h2final6 424 446 IPR013087 -
Alju01g3416 594 SMART c2h2final6 337 359 IPR013087 -
Alju01g3416 594 SMART c2h2final6 386 419 IPR013087 -
Alju01g3416 594 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 157 508 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g3416 Alju-ChrAlju01 62478985 62482162 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g3416 304 594 C2H2 Transcription Factor Family AT1G34370 68.581 9.99e-140 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju01g3416 None None None