Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g3413 ATGCAGGCGAAAATTTCCCCTAATCCACCCTCTTTTCCAGATTTCAGTTTGCAGCATAGTAATCAACAGAGGTGGGAAGATCCCTCTATGTCAGACAACGGTATCTGGATGGAAGCCATATTCAAACAATTCAACCAAGCATGTGGAACCCAGTCCTTGCTTTCGTGTGGTTCCAACGACGGGGTCAAGATCCCAAATCAAGAAAATTGTCAGATGGGCGACGCGTCACGAACCAGTAAACCCCTAGATTGGGATCCCAGCATAATGTTGGAAAATCTTTCTTTCCTGGAAGATAAGATTCATCAGCTCCAGGGCCTGTTGCATTTGATTGTTGATAAGAAAGGTCAACAATTTGGACAACCGGATGAAATCATAACTGAAGAGAAGCAGCTTATCACGGCCAATCTGACATCGATCATCATTCAGTTGATCTCTACAGCTGGAAGTCTTCTTCCTTCTGTCAGGCTTGCCTCTTCAAACACCAGTCCATCTGTGGGACAGCTTGGCCAGATTCCGGGGATTACTTTTCCATCTGGGTTAGATCCGAGCAGTAGTATTATCCAACCACAACATGATATCAGAGATAAAATATGTGATCAATCCAACCAGATTGGTCTTACTAACATGTGTGAAATGGAGCAAAACCACGTGGAAGAACACGAATCGAAAGATGAAGAGGATGTGGATGAGGGCGAGAACCTTCCACCGGGCTCCTTTGAGATTTTACAGCTAGAAAAAGAGGAAATCCTTGCTCCTCACACACACTTCTGTACAATATGTGGTAAGGGATTCAAGAGAGATGCCAATCTTCGGATGCATATGAGAGGCCATGGTGATGAGTACAAAACCCCAGAAGCGCTCGCGAAACCTAACAAAGAATCCGTGTCTGAACCGAGGCTCATCAAGAGATATTCCTGTCCCTACCTTGGCTGCAAGCGTAATAAGGATCACAAGAAGTTTCAACCTTTGAAGACTATTTTGTGTGTGAAGAACCATTACAAAAGAAGTCACTGCGACAAGAGTTACATTTGCAGCCGGTGCCACACGAAGAAATTTTCGGTCATGGCAGACCTTAAAACTCACGAAAAGCACTGTGGTAAGGATAAATGGCTCTGTTCATGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTTGGACACATTGCTCTGTTTCAAGGTCATACACCAGCAATACCATTGGATGAATCAAAAGCACAAGCTGGGCAAGCTGTTATGGAAATCAATGAGAACAATAATAATAATAATAATAATAAGGGAGGAAGCATTAACTTGAGCTTTGAATCAAATGCTTCTTGTTGTGAAAATGGGATTCAAAACATTATGGATGTGAAAGGTATTGCTGATGATCCTATCAGTTACCTCTCATCATTGAACTTTGAAACCTGTAACTTTGCTGAATTCAATGATTTTCCTCGACCCCCGTTTGAAGACGCCACCGAAGGTTCGTTCCCTTTTCTCATGTCAGAATCCTTCAATTATTCTGCTAAATCTGGGGGAGGATCATGTTCTGACAATCTGTTGTGA 1545 0.4278 MQAKISPNPPSFPDFSLQHSNQQRWEDPSMSDNGIWMEAIFKQFNQACGTQSLLSCGSNDGVKIPNQENCQMGDASRTSKPLDWDPSIMLENLSFLEDKIHQLQGLLHLIVDKKGQQFGQPDEIITEEKQLITANLTSIIIQLISTAGSLLPSVRLASSNTSPSVGQLGQIPGITFPSGLDPSSSIIQPQHDIRDKICDQSNQIGLTNMCEMEQNHVEEHESKDEEDVDEGENLPPGSFEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPEALAKPNKESVSEPRLIKRYSCPYLGCKRNKDHKKFQPLKTILCVKNHYKRSHCDKSYICSRCHTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDESKAQAGQAVMEINENNNNNNNNKGGSINLSFESNASCCENGIQNIMDVKGIADDPISYLSSLNFETCNFAEFNDFPRPPFEDATEGSFPFLMSESFNYSAKSGGGSCSDNLL 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g3413 514 ProSiteProfiles Zinc finger C2H2 type domain profile. 255 282 IPR013087 -
Alju01g3413 514 SMART c2h2final6 342 364 IPR013087 -
Alju01g3413 514 SMART c2h2final6 255 277 IPR013087 -
Alju01g3413 514 SMART c2h2final6 304 337 IPR013087 -
Alju01g3413 514 Gene3D Classic Zinc Finger 238 307 - -
Alju01g3413 514 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 71 428 IPR044300 GO:0010044|GO:0010447
Alju01g3413 514 ProSitePatterns Zinc finger C2H2 type domain signature. 257 277 IPR013087 -
Alju01g3413 514 SUPERFAMILY beta-beta-alpha zinc fingers 254 279 IPR036236 -
Alju01g3413 514 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g3413 Alju-ChrAlju01 62444798 62446342 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g3413 223 514 C2H2 Transcription Factor Family AT1G34370 68.350 1.33e-139 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju01g3413 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g3413 01 62444798 62446342 Alju01g3413 01 62444798 62446342 ECH