LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju01g3399	ATGGCGACGTATGATGAAATTTCAGATTTGGAGTGGATTCGTCAATATCTTCTTGGTGAGTTTTCGTCCTCGGAATCCTTCTTGTCCAATCTGTATCCTGTAAAGCTCGAGGATTCTTCTTCATCGGAGTTTGATCTGAAACCGATTGTTCCGGCGCAAAGTTTGTGTTCTTGTATTGTTGAACCTTGTGGTTCTGAAGATGTTGTGGAGATTTTGAACTCCGTGTCGGAGGTTGAAATGGAGAAGAAGCCAACGTCGCCTGAGACTGAGAAGGCTGAGTGCCATGAAGCGGCGATTTTGAGGCGGTACAGGGGCGTTCGGAGGAGGCCGTGGGGCAAGTTTGCGGCGGAGATCCGTGACCCGACCCGGAAAGGGGCACGGGTTTGGCTGGGTACGTTTGATACTGAGATTGATGCTGCCAGGGCTTATGACTGTGCTGCTTTCAGAATGAGGGGCCGAAGGGCAATATTGAACTTTCCTCTTGAGGCCGGGGAATCTGTACCAACGCCCAACCGGCCTGGCCGGAAAAGGAGAAGACAGAGTTCACCGGAGGAGTTGTCCCAAATTTCCACTGAGATTTAA	582	0.5069	MATYDEISDLEWIRQYLLGEFSSSESFLSNLYPVKLEDSSSSEFDLKPIVPAQSLCSCIVEPCGSEDVVEILNSVSEVEMEKKPTSPETEKAECHEAAILRRYRGVRRRPWGKFAAEIRDPTRKGARVWLGTFDTEIDAARAYDCAAFRMRGRRAILNFPLEAGESVPTPNRPGRKRRRQSSPEELSQISTEI	193

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju01g3399	193	PANTHER	DNA-BINDING DOMAIN	81	175	IPR044808	GO:0003700\|GO:0009873
	Alju01g3399	193	Gene3D	AP2/ERF domain	101	162	IPR036955	GO:0003700\|GO:0006355
	Alju01g3399	193	PRINTS	Ethylene responsive element binding protein signature	142	162	IPR001471	GO:0003700\|GO:0006355
	Alju01g3399	193	PRINTS	Ethylene responsive element binding protein signature	103	114	IPR001471	GO:0003700\|GO:0006355
	Alju01g3399	193	FunFam	Ethylene-responsive transcription factor 2	101	162	-	-
	Alju01g3399	193	MobiDBLite	consensus disorder prediction	162	193	-	-
	Alju01g3399	193	Pfam	AP2 domain	102	152	IPR001471	GO:0003700\|GO:0006355
	Alju01g3399	193	SMART	rav1_2	102	166	IPR001471	GO:0003700\|GO:0006355
	Alju01g3399	193	ProSiteProfiles	AP2/ERF domain profile.	102	160	IPR001471	GO:0003700\|GO:0006355
	Alju01g3399	193	CDD	AP2	110	160	IPR001471	GO:0003700\|GO:0006355
	Alju01g3399	193	SUPERFAMILY	DNA-binding domain	102	162	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju01g3399	Alju-ChrAlju01	61969457	61970038	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju01g3399	1	188	AP2-EREBP Transcription Factor Family	AT5G07580	42.254	2.00e-46	150

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Alju01g3399		AP2	1.4e-14	CL0081