Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g3366 ATGCCAATCATCTTCACTACTTCCTCACTCTCTCCTCCTTCAATGGATCAACCACTCGCCGCCGCCACTCCGGCAACCTACCGCGGTGTTCGCATGCGAAAATGGGGCAAATGGGTGTCCGAAATCCGCGAGCCCGGCAAGAAAACCCGGATATGGTTAGGGAGCTACGACATGCCGGAGATGGCTGCAGCTGCATACGACGTCGCAGCTTTACATTTTCGGGGCCAAGCCGCTCGGCTTAACTTCCCGGAGCTCATCGGCAGGCTGCCCCGGCCGGCAACCTCCCGAGCTGAGGATGTGCAGCTGGCAGCACAGCAAGCAGCATTGAAGTTAAAGAGACCGGTGATCAGAGGGCCGTCGGAGTCAGGCGGTGGTACTACGCGTACGGTGGAGGCACCGCCGGTGACGGTGGGGCTGTCGCCGAGCCAAATTCAGGCTATAAATGAGTCACCATTGGATTCACCAAAGATGTGGATGCAAATGGCTGCTGAAGCTGCTCTCATGGTAGGGTTTGATGTAATGTGTGACGACCATGATGAATTAGAAGAAACGCAATATCATGAATCTATATGGGACTTCTAA 582 0.5515 MPIIFTTSSLSPPSMDQPLAAATPATYRGVRMRKWGKWVSEIREPGKKTRIWLGSYDMPEMAAAAYDVAALHFRGQAARLNFPELIGRLPRPATSRAEDVQLAAQQAALKLKRPVIRGPSESGGGTTRTVEAPPVTVGLSPSQIQAINESPLDSPKMWMQMAAEAALMVGFDVMCDDHDELEETQYHESIWDF 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g3366 193 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Alju01g3366 193 FunFam Ethylene-responsive transcription factor 2 25 84 - -
Alju01g3366 193 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Alju01g3366 193 PRINTS Ethylene responsive element binding protein signature 65 85 IPR001471 GO:0003700|GO:0006355
Alju01g3366 193 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Alju01g3366 193 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 23 130 - -
Alju01g3366 193 CDD AP2 27 85 IPR001471 GO:0003700|GO:0006355
Alju01g3366 193 Gene3D AP2/ERF domain 26 84 IPR036955 GO:0003700|GO:0006355
Alju01g3366 193 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677
Alju01g3366 193 Pfam AP2 domain 27 75 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g3366 Alju-ChrAlju01 61091462 61092043 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g3366 26 192 AP2-EREBP Transcription Factor Family AT1G33760 57.895 1.25e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju01g3366 AP2 4e-13 CL0081