Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g3323 ATGGGTCGGAGAAAATTAACAATCAAGACCCTCGAGAATAGGAATTCTCGCAGGGCGTTGTTTGAGAGGAGGAAGAAGGGTTTATTGAAAAAGGCTTCTGAACTTTCCACCCTTTGTGGAATTGATGCTTGTGTGATAATTTTCCCTCCTCCAGATTCTGAAAATGCTAAAGCTGAAACCTTTCCTCAAGATCCCACACAAGTGATTCGCAACATTCAAATGTATAACGCCAAGAAGAACTTCCCTGAGAAACAGAGGAAGAACTACGATCTCCGTAAGTTCTTCAATGATAGGAAGAACCAGGTTGAAGCTGAGACCTCCAGAGTTCGTGAACAGAAACTCAAGATGCTATGTCCAACGGACGACAGCTTCCACAACCTGGGAGAGAATCAACTGAGGACGCTAATTTCTGTGCTGGATTCTAAAATTCAAGATTGTGATCATACAATTGAGCTGTTAAAAGCAATGAAACCAGAGATGCCTGTGGTTCCAATGGGGTTGGACCCGTTGGATTATCATTGTTTGGAGATTCCTGTTGCTGTAATTCCTCCCCATGATGTTTCAGAGGAAACGCACATGGGTTTTGTGCAGAATACGAGTGATGAAGACAATGTTGTCTCTCTCTCAGGTCCAATGATGCAGCTTGTTGGTGATAACAACACTGACCTCATGGATGATCAGGTGATTGGTTTTGGATTAGAGAATAATGATTTAGATATGCTTTTGGGCTTAGAGTGGGATTAG 744 0.4261 MGRRKLTIKTLENRNSRRALFERRKKGLLKKASELSTLCGIDACVIIFPPPDSENAKAETFPQDPTQVIRNIQMYNAKKNFPEKQRKNYDLRKFFNDRKNQVEAETSRVREQKLKMLCPTDDSFHNLGENQLRTLISVLDSKIQDCDHTIELLKAMKPEMPVVPMGLDPLDYHCLEIPVAVIPPHDVSEETHMGFVQNTSDEDNVVSLSGPMMQLVGDNNTDLMDDQVIGFGLENNDLDMLLGLEWD 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g3323 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Alju01g3323 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Alju01g3323 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Alju01g3323 247 CDD MADS_SRF_like 2 88 IPR033897 GO:0000981|GO:0000987|GO:0045944
Alju01g3323 247 SUPERFAMILY SRF-like 2 87 IPR036879 GO:0003677|GO:0046983
Alju01g3323 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 61 IPR002100 GO:0003677|GO:0046983
Alju01g3323 247 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Alju01g3323 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Alju01g3323 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 142 - -
Alju01g3323 247 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g3323 Alju-ChrAlju01 59659531 59660274 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g3323 1 74 Type I MADS-box Gene Family AT3G05860 42.105 1.23e-13 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Alju01g3323 SRF-TF 1.4e-16 No_clan