Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g3314 ATGATGTACGAATTTGTTTGGCGCCATCGAAACAAAGTCCTCGCACGAAAAATCCTAAACCAGAAACCGTTCGTTTTTCGAGGGCCAGCAGCCATAGATGTTTCGTCTTCCTTCTGCTCATTCACTGGGACAAATACAGCTACACAAGCCTCTTCCTTGGCTTCTCGTTCCTCGCAAATGCCCAAATCCCAAACCCTAAGTTCCGTTGAGCTCTTCCACAGTGCTCTCCAATCCCTAAACTCGTCGCCTCCATTTCCGTCAGTTTCTCTCCAGCCGCATCACTCACCTCTTCCGCCGTCTTTCGCCCAATCCAAACTCATCCCTAAAACCCGCTTCGTGGTGGATGCATTCCGCCATGCCGGCGATTACTCTGTTGCCTACTTCCTTTCCCATTTCCACTCTGATCACTACACTGGTCTTGGCTCTAATTGGTCTAAAGGCATTGTCTATTGCTCCAACACGACTGCTCGACTTGTCGTTGAAGTGCTCGGGGTTCCTTCGAAGTTCGTAGTCCCTTTACGGCTCTGTGAGCCGGTTGAGATTGATGGATGTGAAGTTACTCTTGTTGATGCGAATCATTGCCCTGGGGCTGTGCAATTCTTGTTCAAAATTCCAGGTGTTGATGGAAAGTGCGAGAGGTATGTTCATACGGGAGATTTTCGGTTTTCTAAGGCAATGAAGTCGGAGCCCCTACTTGCTGCATATGTTGGTGCGGATGCTGTATTTTTGGACACAACCTATTGTCACTCAAAGTTTCAGTTTCCTAGCCAAGAGGAGTCTGTAGCTTATATAGTTGATGTAGTAGGGAGGGTTGAAAGGGAAAATGATTATTCTACTAGAAATGTTTTGTTTCTTGTTGCTACTTATGTTGTTGGGAAAGAGAAGATTCTGCTTGAACTTGCTCGTAGGTTTAAACGTAAAGTGCATGTGGATGCTAGAAAAATGGAGGTTTTGCGGGTTCTTGGGTATGGGGAAGGCGGGGAGTTTACAGATGATAGCTCTCAAACTAATATGCATGTTGTTGGGTGGAATGTGTTGGGTGAGACATGGCCATACTTTAGGCCTAATTTTGTTAGAATGAAGGAGATTATGACTGAGAGAGGGTACTCTGAAGTTGTGGGTTTTGTTCCAACTGGATGGACTTATGAAGTGAAGCGCAATAAGTTTACTGTGAAGTCGAAGGATTCATTTCAGATTCATCTTGTACCATATAGTGAGCATTCTAACTATGATGAGCTCAGGGAATATGTTAAGTTTTTGAAACCAAAGCGTGTTGTTCCCACCGTAGGTGTAGATGTTGACAAAACTGACAGTAAACATGTGGAAAAAATGATGAAGCATTTTGCTGGGTTAGTTGACGAGACAGCCAACAAGCAGGAATTTCTAAAGGGATTTCATTGTACATCTAGTGGAGGGGGCTTCAAGTTTGACAAGGCTGATAATGATTCCACAAAACCAGGGCAGAACATGGAGACAGAAGTGAAGTTATTTGACAAGGGAGATGATAAGAGCATTAATCCAGATATTGTTCTAAATTTGTCTTCTACTCTTGAGGAGCCTGAATTGCAGGGTCCCACATCACTAAAGGATGAGGAAACAGAGAAAATCAGTCAAGAGATGTCCAGTTATTTGCCTGCATGGGTGACTCAAGGACAAGTTCTAGAGCTGATCCGCAATGTAAGGGGCAATGTTATTGAGGCTGTTTCTAATTTCTATGAACGTGAAACTGAATTTCACGATCAAGTATTTTCCTGTCAAACCTCTGTTTCTGCATCCACATGCTTATCAAATGACAGTGATTGGCTTTCAAAACCACCCGTTGTTAGTAGTAAAACTTGCATGAGTGTTGACATTTCACCAATTCAAAACTTTAAGTTATCCACCCCGAGAAATTCAGTAGCAAGTAGCATTTCTCCTGCTAAAAGGAAGAGAAATAGTGAAAGAAAGCTTAACAAGAAAGTAAAAGTCCATACAAAATCAGAATCAAGTGGGCCAAAACAGTCCATGATAACAAAATTCTTCACTAAAGCCTTGCCTGTCATCACCCAATCTGGTAATTTTGAAGCTAGTACTGATGAAAGCCCTAAAGTTGAAGACTTGCCACAGTTAGATGTTGAAAAAGCATACAAGGATGAGATCAACCAGTTCATGCAGATAATAAATGGCAACGAATCATTAAAAAATTATGCTATCACAATAATTGAGAAGACAAAAGGAGATGTAAATAAGGCATTGGATATATATTACTGTAATCCTGTCAATTTTGATGAGAATGAAAAATCAGTTCAAGTTGAGTGCAAAGTGGACCACTCTTCAGAAAAGAAATGCGTGTCACAGGAATTGAGATCTACACCTGATATTTCTTTGCAAAGCATATCAAGAGAGAATGCGGATGTAACTCTTGTATCTCTACCACCTAAAGAATACAACCCTAAAGAACATGCATGTTGGAGAGATGGAGAGTCTGCTCCATATTTACATCTTGCACGAACCTTTAACCTTCTTGAGGACGAGAAAGGGAAGATAAAGGCTACTTCAATGTTATGCAATATGTTCAGAAGTTTGTTGGCCTTGTCTCCTGCTGATGTACTTCCTGCTGTATATCTATGCACAAACAAAATTGCTGCAGACCACGAAAATAAGGAATTAAATATTGGCGGAAGTCTGATTACTGCAGCACTGGAAGAGGCATGTGGAACTACTCGATTGAAAATAAAGGAGATGTATAACAAATTTGGAGACCTTGGTGATGTTGCTCAAGAGTGTAGACAGACACAGAGATTGCTTGCTCCTCCAACACCACTTCTGATAAAAGATGTTTTCTTCGCACTCCACAAGATAAGCTTACAAACAGGCAATGGAAGCACTCTTAGGAAGAAAGGCATAATTGTAAATCTCATGTGTTCTTGTCGGGAGAAGGAGATAAAGTTTCTTGTTCGTACTTTGGCCAGGAACTTACGGACTGGTGCAATGATTAGAACTGTTTTGCCTGCTCTGGCTCAAGCTGTCATAATGAATTCATGCCCTGCTTTACTCCAAGATGGAACCGCAGAAAATTTGAAGGAGAAGCTTCAGGGCCTTTCAGCAGAAATCATTGAAGCATATAACATACTCCCAAATCTGGATCTTCTAATACCATCCCTAATGAACAAAGGCACTACTTTTTGTGCTTCAAGTTTGTCAATGGTTCCAGGAATACCTATCAAGCCTATGCTTGCAAAGATCACCAATGGCATTCCCCAAGTGCTGAAGTTATTTCATAATAAAGCATTTACTTGTGAATATAAATATGATGGCCAGCGGGCCCAGATTCACAAATTAAGTGATGGTTCGATTCGTGTTTTCTCAAGAAATGGAGATGAAACAACATCAAGATTTCCAGATTTGATTGACATAATCAAGGAATTCTGCAAGCCTGCTGCAGTGACTTTTATACTGGATGCAGAGATTGTAGGTATTGATAGGAAGAATGGATATAGGTTTATGGCATTCCAAGAGTTATCTTCACGTGGGAGAGGAAGTAAAGATGCCTCCGTTACTACAGATAGCATAAAGGTGGACATTTGCCTGTTTGTCTTTGATATCATGTTTGCTAATGGACAGCAGCTTTTGGGTTTTCCTCTCCGTGAAAGGAGAAAATATCTGAAGGATTTGTTCGATGACGAGAAACTTGGTTATTTTGAATATGCAAAGGAAACGATTATTGAAGCAGATGATGCATCATTAACCTGTGAAGCCACAGTAAGTAAGATAAACTCTTTCCTAAAAGGCGCAATCCATTCGTCATGTGAAGGAATTATGGTGAAATCGTTAGATGTTGATGCTGGATATTCTCCATCAAAACGCACAGACACATGGTTAAAGGTGAAGCGAGATTATGTGGATGGTTTAAATGATTCTCTTGATTTAGTACCAATTGGTGGTTGGTATGGAAATGGAAGGAAGGCTGGATGGTATAGCCCATTTCTCATGGCATGTTACAATCCTGAAACAGAGGAGTACCAAAGCGTTTGCCGTGTGATGTCTGGGTTCTCAGATGCCTTCTACATAGAGATGAAAGAATTCTTTTCTGAGGACAAAATATTGTCAAAAAAGCCACCGTATTACCGAACAGCCGAGGTACCAGACAAGTGGTTCTGTCCACTGCTTGTTTGGGAAATAAGAGGTGCAGAATTTACAGTATCTCCAGTTCACGAAGCTGCCATCGGTCTGGTTCATCCGTCTCGCGGCATCTCAATCAGGTTCCCTAGATTTGTGCGCAATGTGTTGGACAGGAACCCAGAAGAATGCAGCACTGCTGCTGATATAGCTGAAATGTTTCATTCTCAGACTCGGAAGATGGATGTTGCAACTGAAGATTAA 4362 0.4143 MMYEFVWRHRNKVLARKILNQKPFVFRGPAAIDVSSSFCSFTGTNTATQASSLASRSSQMPKSQTLSSVELFHSALQSLNSSPPFPSVSLQPHHSPLPPSFAQSKLIPKTRFVVDAFRHAGDYSVAYFLSHFHSDHYTGLGSNWSKGIVYCSNTTARLVVEVLGVPSKFVVPLRLCEPVEIDGCEVTLVDANHCPGAVQFLFKIPGVDGKCERYVHTGDFRFSKAMKSEPLLAAYVGADAVFLDTTYCHSKFQFPSQEESVAYIVDVVGRVERENDYSTRNVLFLVATYVVGKEKILLELARRFKRKVHVDARKMEVLRVLGYGEGGEFTDDSSQTNMHVVGWNVLGETWPYFRPNFVRMKEIMTERGYSEVVGFVPTGWTYEVKRNKFTVKSKDSFQIHLVPYSEHSNYDELREYVKFLKPKRVVPTVGVDVDKTDSKHVEKMMKHFAGLVDETANKQEFLKGFHCTSSGGGFKFDKADNDSTKPGQNMETEVKLFDKGDDKSINPDIVLNLSSTLEEPELQGPTSLKDEETEKISQEMSSYLPAWVTQGQVLELIRNVRGNVIEAVSNFYERETEFHDQVFSCQTSVSASTCLSNDSDWLSKPPVVSSKTCMSVDISPIQNFKLSTPRNSVASSISPAKRKRNSERKLNKKVKVHTKSESSGPKQSMITKFFTKALPVITQSGNFEASTDESPKVEDLPQLDVEKAYKDEINQFMQIINGNESLKNYAITIIEKTKGDVNKALDIYYCNPVNFDENEKSVQVECKVDHSSEKKCVSQELRSTPDISLQSISRENADVTLVSLPPKEYNPKEHACWRDGESAPYLHLARTFNLLEDEKGKIKATSMLCNMFRSLLALSPADVLPAVYLCTNKIAADHENKELNIGGSLITAALEEACGTTRLKIKEMYNKFGDLGDVAQECRQTQRLLAPPTPLLIKDVFFALHKISLQTGNGSTLRKKGIIVNLMCSCREKEIKFLVRTLARNLRTGAMIRTVLPALAQAVIMNSCPALLQDGTAENLKEKLQGLSAEIIEAYNILPNLDLLIPSLMNKGTTFCASSLSMVPGIPIKPMLAKITNGIPQVLKLFHNKAFTCEYKYDGQRAQIHKLSDGSIRVFSRNGDETTSRFPDLIDIIKEFCKPAAVTFILDAEIVGIDRKNGYRFMAFQELSSRGRGSKDASVTTDSIKVDICLFVFDIMFANGQQLLGFPLRERRKYLKDLFDDEKLGYFEYAKETIIEADDASLTCEATVSKINSFLKGAIHSSCEGIMVKSLDVDAGYSPSKRTDTWLKVKRDYVDGLNDSLDLVPIGGWYGNGRKAGWYSPFLMACYNPETEEYQSVCRVMSGFSDAFYIEMKEFFSEDKILSKKPPYYRTAEVPDKWFCPLLVWEIRGAEFTVSPVHEAAIGLVHPSRGISIRFPRFVRNVLDRNPEECSTAADIAEMFHSQTRKMDVATED 1453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g3314 1453 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 1028 1292 - -
Alju01g3314 1453 NCBIfam ATP-dependent DNA ligase 882 1440 IPR000977 GO:0003910|GO:0005524|GO:0071897
Alju01g3314 1453 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 338 1445 - -
Alju01g3314 1453 Pfam ATP dependent DNA ligase domain 1070 1290 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Alju01g3314 1453 Pfam ATP dependent DNA ligase C terminal region 1316 1420 IPR012309 GO:0003910|GO:0006281|GO:0006310
Alju01g3314 1453 Pfam DNA ligase N terminus 824 1000 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Alju01g3314 1453 Gene3D - 1295 1452 IPR012340 -
Alju01g3314 1453 Coils Coil 1017 1037 - -
Alju01g3314 1453 ProSiteProfiles ATP-dependent DNA ligase family profile. 1181 1328 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Alju01g3314 1453 CDD OBF_DNA_ligase_I 1299 1442 - -
Alju01g3314 1453 Pfam DNA repair metallo-beta-lactamase 328 432 IPR011084 -
Alju01g3314 1453 Gene3D - 253 407 - -
Alju01g3314 1453 Gene3D - 803 1072 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Alju01g3314 1453 CDD SNM1A-1C-like_MBL-fold 95 250 - -
Alju01g3314 1453 SUPERFAMILY Metallo-hydrolase/oxidoreductase 125 430 IPR036866 -
Alju01g3314 1453 Gene3D - 1080 1294 - -
Alju01g3314 1453 SUPERFAMILY Nucleic acid-binding proteins 1299 1443 IPR012340 -
Alju01g3314 1453 FunFam DNA ligase 253 407 - -
Alju01g3314 1453 FunFam DNA ligase 1099 1230 - -
Alju01g3314 1453 Gene3D - 107 429 IPR036866 -
Alju01g3314 1453 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 803 1052 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Alju01g3314 1453 CDD Adenylation_DNA_ligase_I_Euk 1061 1293 - -
Alju01g3314 1453 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 1094 1102 IPR016059 GO:0003909
Alju01g3314 1453 MobiDBLite consensus disorder prediction 630 666 - -
Alju01g3314 1453 Gene3D DNA ligase/mRNA capping enzyme 1099 1230 - -
Alju01g3314 1453 FunFam DNA ligase 1295 1452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g3314 Alju-ChrAlju01 59391440 59407527 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g3314 788 1443 Core DNA Replication Machinery Family AT1G08130 38.146 3.43e-163 509