Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g3305 ATGCTCAAGCGCAAAGAAAGTGCCAACGGTAACATGAACAGCCATGCCTCTATCTTCATACCTGCATTCATCTCAACCCTAGCCCTAGTTTCCTCCTCCTCGTCCAATCCTTTTTCAATTTTTCAACTTGCTTTCTTCCGCATCGATTATTGCTTTGATTGGCTGCAGGATTCCTGCAAGTTTAGCAGATCTGAGTTGAAGTCGCAGGAGGGCCTTCGTCACACGTTCTTGCAGCCTCAGCGGCCAACACTGCTGCTCACTGTACTTCAATTTGCTGTTCTTGATATCCAGCTATCTGCTTTAATCTCACTTGTCATCATGGCTTTACAAAACATTGGAGCTGGAAACAGTGATGATGCCTTCTACAGGTATAAGATGCCCAAAATGATAACCAAAATTGAGGGCAGAGGTAATGGCATCAAAACCAACATAGTCAATATGGTTGACATTGCAAAGGCCTTGGCTAGGCCAGCTTCTTATACAACCAAGTATTTTGGTTGTGAGCTTGGAGCTCAATCCAAATTTGATGAGAAAACAGGGACTTCTCATGTGAACGGGGCACATGATACTCCAAAACTTGCTGGTCTTCTGGAGAACTTCATTAAGAAATATGTTCAGTGCTACGGTTGCGGGAATCCTGAAACTGAGATCTTGATCACCAAGAGTCAAATGATCCAGCTAAAATGTGCTGCTTGTGGGTTTGTGTCAGATGTGGATATGAGAGACAAGCTGACCACCTTTATACTCAAGAATCCTCCTGAACCCAAGAAGGGGTCCAAAGACAAGAAGGCCATGAGGAGGGCTGAGAAAGAGAGACTGAAAGAAGGTGAAGCAGCTGATGAGGAACAGAAGAAATTGAAAAAGGAGGGTAAGAAGAAGGTTTCTTCCTCTTCCAAGGATGGAACCACAAAAACAAAAAAGAAATCCAATAGCTCTGATGAAGACCGTGCATCACCTCCTCATGGTAAGATTCACGAGGAGGCTCGTGTTGAAGAGGAAGAAGGTGATGATGATATCCAATGGCAAACAGATACATCACTGGCGGCTGCCCGCCAACGTATCCAGGAGCAATTAAGTGCTGTGACAGCTGATATGGTCATGCTCTCCACAGATGAGTCAGAGAAGAACGCAAAAGAGGCTAGCAAGGCAAATGGTGGGTCTGAGAATGGGAGCTTAATGCCCTACAAGTCTCTTGTTGAGGAAGTCAAATCTAATTTGCAGAAGGGTGTATCTACAAAGGAACTGCAGCACCATCTTGCTGCCCTTACTGCATCTTCTCAGGAAAAAATGTGTGCTTTGTTTGAGGCCCTTGTTGCAGGTGTTGAGAAAGGATTCGCCAAGGAACTTGTCAAGAAGAAGAACTACCTTGGTACTGCTGTTGCTGGAGAAGAAGGATCGCAGATGCTGTTGCTGCATGCAATTGAGGACTTCTGTTGCAGGAGCAATTCCAATGCATTGAAGGAGGTTGCCTTAGTGCTGAAGGCGCTGTACGATGCGGATGTTCTGGAGGAAGAGCACATAGTGCAATGGTATCAGAAAGGGCTAAAGGGAGATTCCAAGGACTCCAAGATATGGAAGAATGCTCAACCCTTCATTGAATGGCTTCAGAATGCAGAATCAGAATCAGAGGAAGAGTAA 1638 0.4518 MLKRKESANGNMNSHASIFIPAFISTLALVSSSSSNPFSIFQLAFFRIDYCFDWLQDSCKFSRSELKSQEGLRHTFLQPQRPTLLLTVLQFAVLDIQLSALISLVIMALQNIGAGNSDDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSHVNGAHDTPKLAGLLENFIKKYVQCYGCGNPETEILITKSQMIQLKCAACGFVSDVDMRDKLTTFILKNPPEPKKGSKDKKAMRRAEKERLKEGEAADEEQKKLKKEGKKKVSSSSKDGTTKTKKKSNSSDEDRASPPHGKIHEEARVEEEEGDDDIQWQTDTSLAAARQRIQEQLSAVTADMVMLSTDESEKNAKEASKANGGSENGSLMPYKSLVEEVKSNLQKGVSTKELQHHLAALTASSQEKMCALFEALVAGVEKGFAKELVKKKNYLGTAVAGEEGSQMLLLHAIEDFCCRSNSNALKEVALVLKALYDADVLEEEHIVQWYQKGLKGDSKDSKIWKNAQPFIEWLQNAESESEEE 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g3305 545 CDD W2_eIF5 394 543 - -
Alju01g3305 545 ProSiteProfiles W2 domain profile. 385 545 IPR003307 GO:0005515
Alju01g3305 545 SMART eIF2Bneu4 121 235 IPR002735 GO:0003743|GO:0006413
Alju01g3305 545 MobiDBLite consensus disorder prediction 254 330 - -
Alju01g3305 545 Gene3D - 211 251 - -
Alju01g3305 545 FunFam Eukaryotic translation initiation factor 5 206 251 - -
Alju01g3305 545 SMART 542_3 453 541 IPR003307 GO:0005515
Alju01g3305 545 SUPERFAMILY ARM repeat 395 539 IPR016024 -
Alju01g3305 545 FunFam Eukaryotic translation initiation factor 5 107 210 - -
Alju01g3305 545 Gene3D - 107 210 - -
Alju01g3305 545 Pfam eIF4-gamma/eIF5/eIF2-epsilon 467 545 IPR003307 GO:0005515
Alju01g3305 545 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 109 544 IPR045196 GO:0003743|GO:0006413
Alju01g3305 545 Coils Coil 265 285 - -
Alju01g3305 545 Gene3D - 387 545 - -
Alju01g3305 545 MobiDBLite consensus disorder prediction 372 392 - -
Alju01g3305 545 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 116 207 IPR016189 GO:0003743|GO:0006413
Alju01g3305 545 MobiDBLite consensus disorder prediction 249 338 - -
Alju01g3305 545 Pfam Domain found in IF2B/IF5 117 233 IPR002735 GO:0003743|GO:0006413
Alju01g3305 545 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 204 239 IPR016190 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g3305 Alju-ChrAlju01 59287178 59290904 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g3305 107 538 Eukaryotic Initiation Factors Gene Family AT1G77840 64.450 1.07e-180 514