Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g3225 ATGGAAGAAGAAGAAGATCAGCTTCAACAGCGACCTCGAGGAAGGGACTATCTACTTGGGGCTTTTAATTCGGCCTTGGTAGATGAAGAAAGCTTCCGAAAAGAAAATGCAGTCCTTCTTATTTTACTTTTTCGTGTTAAATTGAAACTTTCTACGGGAAGGAAACTGAAACTTTCTGTTCTTGCTTGGGGAAATATTTAATCCATATCATTTCCAATTCAAGGTATGGAGTCTGTGGTGGCGACAGTGAGTGGCTATCATGGAACAGAGCGATTCAACCTTATCAAGTTGATTTCGCATTCTGGTGCAAATTATGTTGGCTCAATGTCACGATCAATCACGCACCTGATTTGTTGGCGATTTGAAGGAAAGAAATATAACCTTGCTCGGAAGTTCAGAACGGTTATAGTAAATCACCAGTGGATTGAAGACTGTTTAAAGCAAGGAAGGCGTGTTCCAGAGGAACCTTATAGATTGAAAAGTGGAGAAGATGTGGGGCCAATATTGCTGCAAGTTCCACTTATTGTTCAGGCGAGTAGCTTAACTAAGAATAAAATGCTTAAACATGGATCAGATGGCATTGTCTCCAAAAGTCAAACAACTGAAATCAGTTCTGGAGCTTCTGGAAATTCTGTCAGGCAAAATTTTTATTTAATGGACGAGGAGGAGCCAATAACTTTTTCTTCCAGACGATCAAGGACAGAAAAAAGAAAGATCTCGTATAGTAATGGAGTGGCTACTTCTGCTGGTCCTTCTCGTCACAGAAGAAGGCTTGTAAAAAGGAATGTTCAAGAAGTTTCAGCTCCTTTACTTGATTTAAACTCTGGGTACCTTAGCAGAATGGATAGATTAAATGTTGATGCTGTAGCTTCTTCTAGCCTTTCTGGTTGTGTCTCTAGTGATACTATTTTAGAAAATAGAGAAGTATCAGATATTGACTCATATAACCAAAACATATCTATCAATACAGCATCAAATGCCACTGGACAAATCAAAGATTCAAATAATTTATCTAGTTCAAGAATTTCAGCTCTATGCGGACAAGATGCCTTGCCTACCGCAGAACAAATATCTATAGACGAGTGTTTTGAAAAGTCCGCAGATAGTATTCAGGATGGTCATGCGGCTGACTTACCTACGTCGACAGAGTTGTCATGTGTCATATGTTTGACAGAATTCAGCTCAACGCGGGGGGTTTTGCCATGTGGACATAGGTTTTGTTATTCTTGTATCCAGAGTTGGGTTGATCACAGGACTACAATGGGAAAAGTCTCAACGTGTCCGTTGTGCAAGTCAAGGTTTGACAACATCATTAAATATGAGGATATGGCTGTGGATCAAAAGATATATTCCCAAACAATCCCATGTGGTATTCCAATCTCACATATCAATTTACTTATGGATCGGGAACAACCAAATTATGGTTTTGAGGCAGGTGCTTGTGTTGTTTGCCGGGGACGAGAACCTGAGGATCTGCTTATGAGTTGCCATCTTTGCCATATTCGACAAATCCATTCCTATTGCCTGGACCCTCCTTTATTGCCATGGACATGCGATCATTGTAAGGATCTTCGGATGCTTTATCATAGTCATTCACATTAA 1602 0.4001 MEEEEDQLQQRPRGRDYLLGAFNSALVDEESFRKENAVLLILLFRVKLKLSTGRKLKLSVLAWGNIXSISFPIQGMESVVATVSGYHGTERFNLIKLISHSGANYVGSMSRSITHLICWRFEGKKYNLARKFRTVIVNHQWIEDCLKQGRRVPEEPYRLKSGEDVGPILLQVPLIVQASSLTKNKMLKHGSDGIVSKSQTTEISSGASGNSVRQNFYLMDEEEPITFSSRRSRTEKRKISYSNGVATSAGPSRHRRRLVKRNVQEVSAPLLDLNSGYLSRMDRLNVDAVASSSLSGCVSSDTILENREVSDIDSYNQNISINTASNATGQIKDSNNLSSSRISALCGQDALPTAEQISIDECFEKSADSIQDGHAADLPTSTELSCVICLTEFSSTRGVLPCGHRFCYSCIQSWVDHRTTMGKVSTCPLCKSRFDNIIKYEDMAVDQKIYSQTIPCGIPISHINLLMDREQPNYGFEAGACVVCRGREPEDLLMSCHLCHIRQIHSYCLDPPLLPWTCDHCKDLRMLYHSHSH 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g3225 533 SUPERFAMILY BRCT domain 73 160 IPR036420 -
Alju01g3225 533 SUPERFAMILY RING/U-box 379 437 - -
Alju01g3225 533 SMART BRCT_7 73 149 IPR001357 -
Alju01g3225 533 Gene3D BRCT domain 73 164 IPR036420 -
Alju01g3225 533 SUPERFAMILY FYVE/PHD zinc finger 477 523 IPR011011 -
Alju01g3225 533 PANTHER F5A8.9 PROTEIN 226 530 - -
Alju01g3225 533 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 363 455 IPR013083 -
Alju01g3225 533 SMART ring_2 386 430 IPR001841 -
Alju01g3225 533 ProSitePatterns Zinc finger RING-type signature. 402 411 IPR017907 -
Alju01g3225 533 ProSiteProfiles Zinc finger RING-type profile. 386 431 IPR001841 -
Alju01g3225 533 Pfam twin BRCT domain 79 141 IPR001357 -
Alju01g3225 533 ProSiteProfiles BRCT domain profile. 68 159 IPR001357 -
Alju01g3225 533 Pfam Ring finger domain 385 431 IPR001841 -
Alju01g3225 533 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 468 532 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g3225 Alju-ChrAlju01 57793517 57801297 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g3225 113 159 Core DNA Replication Machinery Family AT4G02110 50.000 3.30e-11 64.3