Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g3193 ATGGCTTTTGGGACATTGGATAAACATGTCCGACTATTTAGTGTCTTGATATGTTTGATAGTATTTGATTTTTTGACCAATGCATCCCTCAGGCAAGAGGCTTCCTTCTCTGATTCTGTCATCCAACTGTACATAATACAAACTCGACCCGTCAACCCGTCGGAGCCCCTCATTGCCGGCGAAATCTCCTCCTCCTCCTCCATTTCTCTCTACAATCTCCCTCTGTTCCTGAATCTTGATTTTCTCGCGAGAAGTCTTCGGTTTCCAATCCTTTCTCTGTCGTGTGTAGCAGAGGAGATGGCTCGGTCTGCGAGGGGCCAGCAAGAAGAATTGGAAGACGACGAAGAAGATCATCTGACTGGAAATGGCTCTTCTTCGTCCAAAGTGAAGGTGGATGAAGCGACTAGAGAGCAGCGGGTTAACGCGCATCGTTCTAAGCATTCAGAAACTGAGCAGCGTAGAAGGAGCAAGATAAATGAAAGATTTCAGATTCTGAGAGACCTCATTCCTCAAAATGATCAAAAAAGGGATAAGGCTTCTTTCTTGTTGGAGGTTATTGAGTATGTTCAATTTTTACAGGAGAAAATACAAATGTATGAGCAATCTTACCAAGGGTGGAATCAAGAGCCAATGAAATTAATTCCTTGGAGAAATCATCGTGGACCTACAGATAATGTAATATCACAGGCTATACAAAATGGTTCTGGTCATGAGAACAATGATGATGTCTCTCCGTCATTGCCCTTGAATGCACAGAATACAATGGAATCTGACTTGTCATCAACAATCATTCATAAGGCTTCCCCCCTTGCTTTAACTTCTGATGCAGTTCCCTTGGGTATGCAAATGCGATTGGACATGTTTGATCTGACAGTGAACAGTGGCATTCCAGCCCAACATTTACATGAAGCAGTATCTAACACTGAGAACATGCCTTCCCATAGTCAGCCTCAGGTGTGTCTTGGCGAACCTAATGAGGGTGCATATGATTTTCAAAATAATACATTGAAGGAACAGGATGAACTGGGATATGAAAGTGAATCAGTTAGCATCTCAAGAGCCTATTCTCAGGGCATATTGGACACTTTTGTGCAATCATTGCGGTCTTCAGGTGTGGATTTATCTGAGGCCAACGTTTCAGTACAAATTGATGTAGGAAGACGATCAATTGCCTCGACATCCTGCTCAAAGGGTCACGAGAACCAATTTGTGAACACCCCATCAATGCCTTGTTCAGGAGTTGATTACTACAGTGAAGATTCTGAACAAGCTCTTAAGAGGCTCAGAACAGAAGAGAGTTAG 1302 0.4309 MAFGTLDKHVRLFSVLICLIVFDFLTNASLRQEASFSDSVIQLYIIQTRPVNPSEPLIAGEISSSSSISLYNLPLFLNLDFLARSLRFPILSLSCVAEEMARSARGQQEELEDDEEDHLTGNGSSSSKVKVDEATREQRVNAHRSKHSETEQRRRSKINERFQILRDLIPQNDQKRDKASFLLEVIEYVQFLQEKIQMYEQSYQGWNQEPMKLIPWRNHRGPTDNVISQAIQNGSGHENNDDVSPSLPLNAQNTMESDLSSTIIHKASPLALTSDAVPLGMQMRLDMFDLTVNSGIPAQHLHEAVSNTENMPSHSQPQVCLGEPNEGAYDFQNNTLKEQDELGYESESVSISRAYSQGILDTFVQSLRSSGVDLSEANVSVQIDVGRRSIASTSCSKGHENQFVNTPSMPCSGVDYYSEDSEQALKRLRTEES 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g3193 433 Gene3D - 140 213 IPR036638 GO:0046983
Alju01g3193 433 Pfam Helix-loop-helix DNA-binding domain 144 193 IPR011598 GO:0046983
Alju01g3193 433 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 219 IPR036638 GO:0046983
Alju01g3193 433 Coils Coil 97 117 - -
Alju01g3193 433 CDD bHLH_AtBIM_like 141 217 - -
Alju01g3193 433 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 142 192 IPR011598 GO:0046983
Alju01g3193 433 MobiDBLite consensus disorder prediction 130 155 - -
Alju01g3193 433 SMART finulus 148 198 IPR011598 GO:0046983
Alju01g3193 433 FunFam BHLH domain class transcription factor 140 212 - -
Alju01g3193 433 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 98 431 IPR044295 GO:0003700|GO:0006351|GO:0046983
Alju01g3193 433 Coils Coil 189 209 - -
Alju01g3193 433 MobiDBLite consensus disorder prediction 104 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g3193 Alju-ChrAlju01 57077747 57085799 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g3193 102 389 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 38.742 5.80e-53 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju01g3193 HLH 1.6e-14 No_clan