Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju01g3180 | ATGGGTTCTGTTTGTGGCTGTTTGAGTGTTGAGAATCTTGAAGATTATGTAAATCCAAATAGTTCTGTATATAGAAATTGCATGTGCTTCAGTTGCTTCATACATAACTTTTTGAATGTGTATACTACAATATTTCGTAGGCGCGAAATGCATTCTATTTCTTCATCTATTCAGGGGGCAGCATCTATGACTTCTACGGCATCACTAGATAATTCATTATCAGACATGTACCGTGCCCCTCCACGGCCCTTGCCATATGATGCAGACTCCAGGCATTTTCTCTCACAACGTGATGGACTAGTTTCAAGACGGGAGAAGAGTTCAAGTCATTCAAATGAGGAATCACATCCTCTACGAAGTGATCTAGATGTGGATTCAGAATCTTTGAATATGGGAGACAAATGGAATGATTGTGCCTGTGAAAATGGATCAAAGGAGTACCTTACTAAGTCTTCACTAAGACTCTCATCAGCAAAATATTCAACCGGAGCTGGGGCGGTCTATGCATCATTAGAAGATGAGGATATTTGCCCAACATGCCTTGAAGAATATACTCGAGAGAATCCAAAGATAATGACAAAATGCTCTCACCATTTTCATCTTGGCTGCATCTATGAGTGGATGGAGAGAAGTGAAAGCTGTCCAGTGTGTGGGAAGGTACTTTTCCTCCTTTTGGTCACTGAATATTTTCTTGCTGTAATTATTGGTATTTCACCAGCAAGAAGCATAGAATGGACTAAGGATTGTCAAACTGTATGCTCAACGATCTTTCTTCATAAATATTTTTTACATAAAAAGAAGTCTTGA | 807 | 0.3916 | MGSVCGCLSVENLEDYVNPNSSVYRNCMCFSCFIHNFLNVYTTIFRRREMHSISSSIQGAASMTSTASLDNSLSDMYRAPPRPLPYDADSRHFLSQRDGLVSRREKSSSHSNEESHPLRSDLDVDSESLNMGDKWNDCACENGSKEYLTKSSLRLSSAKYSTGAGAVYASLEDEDICPTCLEEYTRENPKIMTKCSHHFHLGCIYEWMERSESCPVCGKVLFLLLVTEYFLAVIIGISPARSIEWTKDCQTVCSTIFLHKYFLHKKKS | 268 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju01g3180 | 268 | CDD | RING-H2_AIRP1-like | 173 | 221 | - | - | |
| Alju01g3180 | 268 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 54 | 221 | - | - | |
| Alju01g3180 | 268 | MobiDBLite | consensus disorder prediction | 99 | 125 | - | - | |
| Alju01g3180 | 268 | SUPERFAMILY | RING/U-box | 171 | 224 | - | - | |
| Alju01g3180 | 268 | SMART | ring_2 | 177 | 217 | IPR001841 | - | |
| Alju01g3180 | 268 | ProSiteProfiles | Zinc finger RING-type profile. | 177 | 217 | IPR001841 | - | |
| Alju01g3180 | 268 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 155 | 221 | IPR013083 | - | |
| Alju01g3180 | 268 | Pfam | Ring finger domain | 176 | 217 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Alju01g3180 | Alju-ChrAlju01 | 56687598 | 56689660 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Alju01g3180 | 1 | 221 | C3H Transcription Factor Family | AT5G15790 | 57.080 | 1.51e-86 | 256 |