Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju01g3160 | ATGAAAAAGGATTTTGATTCGCCCTGGCTCGACTCGGCAGACACAGTAGAGATGGAGCAGGAACACGAAGAGCATGAAGTGTACGGAGGCGATATCCCCGACGACGCAGAGATGGATGCAGATTTCAGAGTTGAAGAAGAAGAAGACCAAGATGGACACCCACATGACCCCAATCACTCTAATAAGGACTTGGAGGACATGAAGAAGAGGCTCAAGGAAATTGAGGAAGAAGCTAGTGCCCTTCGCGAAATGCAGGCTAAGGTTGAGAAAGAGATGGGTGCTGTTCAAGATTCAAGTGGTTCTTCTGCAAGTCAAGCTGAGAAGGAGGAAGTGGATTCCCGGTCAATCTATGTTGGTAATGTTGACTATGGATGTACACCTGAAGAAGTCCAGCAACATTTTCAGTCTTGTGGAACTGTGAACAGAGTGACGATATTGACAGACAAATTTGGTCAACCAAAAGGATTCGCTTATGTTGAGTTTGTTGAGGTTGATGCTGTTCAGAATGCTCTTTTATTGAATGAATCAGAGTTGCATGGTCGTCAATTGAAGGTCTCTGCTAAGCGTACAAACGTTCCTGGAATGAAACAGTATCGTGGAAGAAGACCTGTGGGTTTTCGACCTAGAATGCCTTACATGCCTGCCCCATTCTATCCTCCATATGGTGGTTATGGGAGGTTTCCGAGGTACAGGCGTCCTACGCGTTACAGGCCATACTAA | 720 | 0.4597 | MKKDFDSPWLDSADTVEMEQEHEEHEVYGGDIPDDAEMDADFRVEEEEDQDGHPHDPNHSNKDLEDMKKRLKEIEEEASALREMQAKVEKEMGAVQDSSGSSASQAEKEEVDSRSIYVGNVDYGCTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVDAVQNALLLNESELHGRQLKVSAKRTNVPGMKQYRGRRPVGFRPRMPYMPAPFYPPYGGYGRFPRYRRPTRYRPY | 239 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju01g3160 | 239 | Coils | Coil | 61 | 91 | - | - | |
| Alju01g3160 | 239 | SMART | rrm1_1 | 115 | 186 | IPR000504 | GO:0003723 | |
| Alju01g3160 | 239 | Gene3D | - | 52 | 187 | IPR012677 | - | |
| Alju01g3160 | 239 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H | 29 | 210 | - | - | |
| Alju01g3160 | 239 | MobiDBLite | consensus disorder prediction | 1 | 113 | - | - | |
| Alju01g3160 | 239 | SUPERFAMILY | RNA-binding domain, RBD | 105 | 212 | IPR035979 | GO:0003676 | |
| Alju01g3160 | 239 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
| Alju01g3160 | 239 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 116 | 184 | IPR000504 | GO:0003723 | |
| Alju01g3160 | 239 | CDD | RRM_II_PABPs | 115 | 186 | - | - | |
| Alju01g3160 | 239 | MobiDBLite | consensus disorder prediction | 47 | 90 | - | - | |
| Alju01g3160 | 239 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 114 | 190 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Alju01g3160 | Alju-ChrAlju01 | 56318532 | 56327764 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Alju01g3160 | 115 | 186 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 35.526 | 4.04e-09 | 54.7 |